BAC Information

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BAC

Clone NameB6Ng01-338K11
ChromosomeX (Build37)
Map Location 107,425,446 - 107,426,306
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338K11.bB6Ng01-338K11.g
ACCGA122881GA122882
length1,183971
definitionB6Ng01-338K11.b B6Ng01-338K11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatacctaatggctgagaagcacctgaaagaatg
ttcaacatccttaatcatcagagaaatacaaatcaaaacaaccttgagat
tccatctcataccaatcaaaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgcagagaaagaggaacactcctccactgctggtg
ggattgcaagcttttacaatcactctggaagtcagcctcgaggttcctca
gaaaattggacatactactactggaaaatccagcaatatctctccggggt
atatacccagaagatgttccaactggtaataagaacacatgctccactat
gttcatagcagccttatttataatagccagaagatggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacattgacacaata
gagtactactcagctattaaaaggaatgaatttgtgaaattcctaggcca
atggatggacctggagggcatcatcctgagtgaggtaacacaatacaaaa
gaactcacatggtatgcactcactgataagtggatattagcccagaatct
tagaatacccaagatacaagatacattttgcaaaacacatgaaactcaag
aagaacaaataccaaagattggacactttgtaccttcttagaattgggaa
caaaacacccatggaaggagttacagagacacagtttggagctgagatga
aaggatggaccatctagagatagtcatatcggggatccatcccataatca
gcctccaaatgctgacaccattgcatacactagcaagattttgctgaaca
gaccctgatgtagctgtctcttgtgggactatgctggggcctagcaaaca
cagatgtggatgcttacagtccgctattggatggaacacaggcccccaat
ggagtatctagagaaagtacccaaggagctaaaggagtctgcaaccctat
aggtggacacagtattgactaaacagtacccccggtccccagctcttgtc
ttctagcttcataatgtatcagaagaatgggcctagtggcatcaatggaa
gggaagcccattggacttgcactttaatgcctcagtacaggcaatgccag
ggcagaatgggagtgggggtggtaaaggaatgg

gaattctcttatatgaaccaagcctttaatctaaagagaaagcagctgat
tgtgcctgtaatagtcctgtcatatttttgtgagtgagatcatgttttct
ggcatgttcatactatagaatacaagatttatagtgaggcagaattattg
ataacaaattctttccaagcaagccacatggcaacttccaggatgatgaa
agccaactagcatggagggtgttttcaattagtcctagcttgatttcttc
gtatccttcagctaaagtatgtagtgtcttcagcaatagggtctaactat
gtagtttgagaatgtaaccaatggcaggagtgatagcttcatcaggcaat
gagctatcacataaggttctgatttctgttcaattctgttatgtattcac
ttgtacatctgctgttcacacagagttgaccaagtgcttgcaaggtctcc
tttttccactgagccatccatagaatgaggcctttgaatatatctcaact
gtcattatagactgtcagaggccagtctcttgagttactattattgtagt
ttttatctcagtccactagctactcttttcctttttttcttgccatatgg
tatcagtggctacttgcattgttatagctacccacacccttttttgattc
tacttttaccatttatgtaccaggcatctacatgaatgggcattatccta
ttttaacactttatctgccttagctattgacccagtcactggaaggttct
tagtagttcaaaaagacactagccctaggacagcctgtattgcattggtg
actgggtatacagacactacaccacttatattagtatttacatagatgct
gattttctgtcaccataggaacaggctttatcaaaagatgtatattgtgg
ttttattgtgaaaatgtcaccaataggctcatatgtttgtcaccaaaagt
tggtacagtttgggaaaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107425446_107426306
seq2: B6Ng01-338K11.g_63_923

seq1  GAATTCTCTTATATGAACCAAGCCTTTAATCTAAAGAGAAAGCAGCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTATATGAACCAAGCCTTTAATCTAAAGAGAAAGCAGCTGAT  50

seq1  TGTGCCTGTAATAGTCCTGTCATATTTTTGTGAGTGAGATCATGTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTAATAGTCCTGTCATATTTTTGTGAGTGAGATCATGTTTTCT  100

seq1  GGCATGTTCATACTATAGAATACAAGATTTATAGTGAGGCAGAATTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTCATACTATAGAATACAAGATTTATAGTGAGGCAGAATTATTG  150

seq1  ATAACAAATTCTTTCCAAGCAAGCCACATGGCAACTTCCAGGATGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAATTCTTTCCAAGCAAGCCACATGGCAACTTCCAGGATGATGAA  200

seq1  AGCCAACTAGCATGGAGGGTGTTTTCAATTAGTCCTAGCTTGATTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTAGCATGGAGGGTGTTTTCAATTAGTCCTAGCTTGATTTCTTC  250

seq1  GTATCCTTCAGCTAAAGTATGTAGTGTCTTCAGCAATAGGGTCTAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTCAGCTAAAGTATGTAGTGTCTTCAGCAATAGGGTCTAACTAT  300

seq1  GTAGTTTGAGAATGTAACCAATGGCAGGAGTGATAGCTTCATCAGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGAGAATGTAACCAATGGCAGGAGTGATAGCTTCATCAGGCAAT  350

seq1  GAGCTATCACATAAGGTTCTGATTTCTGTTCAATTCTGTTATGTATTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCACATAAGGTTCTGATTTCTGTTCAATTCTGTTATGTATTCAC  400

seq1  TTGTACATCTGCTGTTCACACAGAGTTGACCAAGTGCTTGCAAGGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATCTGCTGTTCACACAGAGTTGACCAAGTGCTTGCAAGGTCTCC  450

seq1  TTTTTCCACTGAGCCATCCATAGAATGAGGCCTTTGAATATATCTCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCACTGAGCCATCCATAGAATGAGGCCTTTGAATATATCTCAACT  500

seq1  GTCATTATAGACTGTCAGAGGCCAGTCTCTTGAGTTACTATTATTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTATAGACTGTCAGAGGCCAGTCTCTTGAGTTACTATTATTGTAGT  550

seq1  TTTTATCTCAGTCCACTAGCTACTCTTTTCCTTTTTTTCTTGCCATATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTCAGTCCACTAGCTACTCTTTTCCTTTTTTTCTTGCCATATGG  600

seq1  TATCAGTGGCTACTTGCATTGTTATAGCTACCCACACCCTTTTTTGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGGCTACTTGCATTGTTATAGCTACCCACACCCTTTTTTGATTC  650

seq1  TACTTTTACCATTTATGTACCAGGCATCTACATGAATGGGCATTATCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTACCATTTATGTACCAGGCATCTACATGAATGGGCATTATCCTA  700

seq1  TTTTAACACTTTATCTGCCTTAGCTATTGACCCAGTCACTGGAAGGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACACTTTATCTGCCTTAGCTATTGACCCAGTCACTGGAAGGTTCT  750

seq1  TAGTAGTTCAAAAAGACACTAGCCCTAGGACAGCCTGTATTGCATTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTTCAAAAAGACACTAGCCCTAGGACAGCCTGTATTGCATTGGTG  800

seq1  ACTGGGTATACAGACACTACACCACTTATATTAGTATTTACATAGATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTATACAGACACTACACCACTTATATTAGTATTTACATAGATGCT  850

seq1  GATTTTCTGTC  861
      |||||||||||
seq2  GATTTTCTGTC  861


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