BAC Information

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BAC

Clone NameB6Ng01-341E10
Chromosome5 (Build37)X (Build37)
Map Location 60,828,633 - 60,829,772110,399,486 - 110,399,696
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC100041498, LOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341E10.bB6Ng01-341E10.g
ACCGA124710GA124711
length1,1301,005
definitionB6Ng01-341E10.b B6Ng01-341E10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,828,633 - 60,829,772)(110,399,486 - 110,399,696)
sequence
gaattcctagtattcctaaaactgaccatagttgatacaaactttcagaa
ctgtggcctgacactctggaaataagtgaagtatatcataaaacaatgca
aaattcttatcagaaatctccacaaaaaagaaatattctaatctccatga
gcatattttagatgatttgggtatgactagaaattcaaccctcaacttag
gactcaaaatgaaaactgtatagctccatgaaatcataattatcaaaaat
ctaagaggaaaaggagcaaatactttgcaaatataagaatatcaaaaata
tcctgggacaatgaggtgaatcagcagctaaaggtactttccctaatgtc
tcatgaccttagtttaacatcataaagacaactggtggaagcaagttgtc
ctcttacctcaataagtatacgacactatacatgtgtgcatggatgtatg
tacacgtacacacatacacaagcacacatacagaaacatgataaaataaa
tgaatatgtggacatcaatttaagtgcaaacatggagaaaaatctgcata
agtataggttaaattatgtgaagtattttacatttctttgggaaatgttt
aatttttttaacatcaaattattggctttgtgtttgtttttttcttgttt
atgatctgactttttatttctctatgcaaaactatcacttatttttggca
cttaaacttgttataaccaaagctaaccattaatgtactaatttaacatg
tcaagcataatatatggcctcctaaatgttagtgttgctagtagcaatta
tgagtttattagaataaaagtcaatgaattttggcacaagttgttaatga
tggtgaatgttttatactgttttattctgtttatggagaaagcctgatca
acccactgctcctaaactgttttcaacttctacagatcacaaagaagttg
atcattttagttgcagtccttcattgcaactcatacagaattttccttgt
gtcatcaccctgggtctattttgcactaacgcagcttcatctggctttga
tgggccagggttattttccctatgccttatgtagttgcatttttacaggc
tgaactcagaggtcagtgctttctgcacct

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcgaagtg
ggtgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttatgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcgtgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaatctgtgttgctttggccaggaaggtggcaggttgtctggagt
ctaagatggcgccgccccagaagctctgcgactctcgcccgtaccagaaa
cggctggcctctctattccacacggtcacccgtgcagcctgccctccgcg
gagtcccagagtcaagaaggctcccgctggcgcctgtgacacaaacctct
caggccgggcagacacccgtgctctcaccaggaaggtggccagctgtctg
gagctgaagatggcgccgcctcagaagctctgtggctctcgccaggaagc
gttatttttcaatatacataaaggcatcattgcttgagcataataataaa
actttattttgtataagaaatattgaatatatgtagtgtcttcttttttt
tcccattttttattagtatttagctcatttacatttccaaagctatacca
aaagtccccatagccacccacccccactccccaacccacccactccccct
ttttggccctggcgttcccctgtacaggggcatataaagtttgcatgtca
atggctctcttccagtgatggccgactagccatcttttgatcatatgcag
ctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60828633_60829772
seq2: B6Ng01-341E10.b_45_1174

seq1  GAATTCCTAGTATTCCTAAAACTGACCATAGTTGATACAAACTTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTATTCCTAAAACTGACCATAGTTGATACAAACTTTCAGAA  50

seq1  CTGTGGCCTGACACTCTGGAAATAAGTGAAGTATATCATAAAACAATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTGACACTCTGGAAATAAGTGAAGTATATCATAAAACAATGCA  100

seq1  AAATTCTTATCAGAAATCTCCACAAAAAAGAAATATTCTAATCTCCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTATCAGAAATCTCCACAAAAAAGAAATATTCTAATCTCCATGA  150

seq1  GCATATTTTAGATGATTTGGGTATGACTAGAAATTCAACCCTCAACTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTAGATGATTTGGGTATGACTAGAAATTCAACCCTCAACTTAG  200

seq1  GACTCAAAATGAAAACTGTATAGCTCCATGAAATCATAATTATCAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAATGAAAACTGTATAGCTCCATGAAATCATAATTATCAAAAAT  250

seq1  CTAAGAGGAAAAGGAGCAAATACTTTGCAAATATAAGAATATCAAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGAAAAGGAGCAAATACTTTGCAAATATAAGAATATCAAAAATA  300

seq1  TCCTGGGACAATGAGGTGAATCAGCAGCTAAAGGTACTTTCCCTAATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGACAATGAGGTGAATCAGCAGCTAAAGGTACTTTCCCTAATGTC  350

seq1  TCATGACCTTAGTTTAACATCATAAAGACAACTGGTGGAAGCAAGTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACCTTAGTTTAACATCATAAAGACAACTGGTGGAAGCAAGTTGTC  400

seq1  CTCTTACCTCAATAAGTATACGACACTATACATGTGTGCATGGATGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCTCAATAAGTATACGACACTATACATGTGTGCATGGATGTATG  450

seq1  TACACGTACACACATACACAAGCACACATACAGAAACATGATAAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTACACACATACACAAGCACACATACAGAAACATGATAAAATAAA  500

seq1  TGAATATGTGGACATCAATTTAAGTGCAAACATGGAGAAAAATCTGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGTGGACATCAATTTAAGTGCAAACATGGAGAAAAATCTGCATA  550

seq1  AGTATAGGTTAAATTATGTGAAGTATTTTACATTTCTTTGGGAAATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGTTAAATTATGTGAAGTATTTTACATTTCTTTGGGAAATGTTT  600

seq1  AATTTTTTTAACATCAAATTATTGGCTTTGTGTTTGTTTTTTTCTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTAACATCAAATTATTGGCTTTGTGTTTGTTTTTTTCTTGTTT  650

seq1  ATGATCTGACTTTTTATTTCTCTATGCAAAACTATCACTTATTTTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGACTTTTTATTTCTCTATGCAAAACTATCACTTATTTTTGGCA  700

seq1  CTTAAACTTGTTATAACCAAAGCTAACCATTAATGTACTAATTTAACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTTGTTATAACCAAAGCTAACCATTAATGTACTAATTTAACATG  750

seq1  TCAAGCATAATATATGGCCTCCTAAATGTTAGTGTTGCTAGTAGCAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATAATATATGGCCTCCTAAATGTTAGTGTTGCTAGTAGCAATTA  800

seq1  TGAGTTTATTAGAATAAAAGTCAATGAATTTTGGCACAAGTTGTTAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATTAGAATAAAAGTCAATGAATTTTGGCACAAGTTGTTAATGA  850

seq1  TGGTGAATGTTTTATACTGTTTTATTCTGTTTATGGAGAAAGCCTGATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATGTTTTATACTGTTTTATTCTGTTTATGGAGAAAGCCTGATCA  900

seq1  ACCCACTGCTCCTAAACTGTTTTCAACTTCTACAGATCACAAAAGAAGTT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCCACTGCTCCTAAACTGTTTTCAACTTCTACAGATCAC-AAAGAAGTT  949

seq1  GATCATTTTAGTTGCAGTCCTTCATTGCAAACTCATACAGAATTTTCCTT  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATCATTTTAGTTGCAGTCCTTCATTGC-AACTCATACAGAATTTTCCTT  998

seq1  GTGTCATCACCCCTGGGTCTATTTTGCACTAACGCAGGCTTCATCTGGCC  1050
      ||||||||| |||||||||||||||||||||||||| ||||||||||| |
seq2  GTGTCATCA-CCCTGGGTCTATTTTGCACTAACGCA-GCTTCATCTGG-C  1045

seq1  TTTGAATGGGCCA-GGTTATTTTCCCCTAATGCTTTATGTAGTTTGCATT  1099
      |||| |||||||| ||||||||||||   |||| |||||||| |||||||
seq2  TTTG-ATGGGCCAGGGTTATTTTCCC--TATGCCTTATGTAG-TTGCATT  1091

seq1  TTTACAAGCTG-ACTCAGAGGTTCAGTTGCTTTTCTGCACCT  1140
      |||||| |||| ||||||||| |||| ||| |||||||||||
seq2  TTTACAGGCTGAACTCAGAGG-TCAG-TGC-TTTCTGCACCT  1130


seq1: chrX_110399486_110399696
seq2: B6Ng01-341E10.g_865_1075

seq1  TTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGC  50
      ||||||| ||||||||||||| ||||||||||||||||||||||||| ||
seq2  TTTTTTTCCCATTTTTTATTA-GTATTTAGCTCATTTACATTTCCAAAGC  49

seq1  TATACCAAAAGTCCCCATA-----CTCCCCCCACTCCCCTACCCACCCAC  95
      |||||||||||||||||||     |  |||||||||||| ||||||||||
seq2  TATACCAAAAGTCCCCATAGCCACCCACCCCCACTCCCCAACCCACCCAC  99

seq1  TCCCCCTTTTTGGCCCTGGCATTCCCCTGTACTGGGG--AATAAAGTTTG  143
      |||||||||||||||||||| ||||||||||| ||||   ||||||||||
seq2  TCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACAGGGGCATATAAAGTTTG  149

seq1  CAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTT  193
      || || ||||||  ||||| || |||||||||||||||| ||||||||||
seq2  CATGT-CAATGG--CTCTC-TTCCAGTGATGGCCGACTA-GCCATCTTTT  194

seq1  GATACATATGCAGCTAGA  211
      ||| ||||||||||||||
seq2  GAT-CATATGCAGCTAGA  211


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