BAC Information

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BAC

Clone NameB6Ng01-341G22
ChromosomeX (Build37)X (Build37)
Map Location 116,642,706 - 116,642,92639,557,919 - 39,558,996
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665087, LOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341G22.bB6Ng01-341G22.g
ACCGA124814GA124815
length1,0161,076
definitionB6Ng01-341G22.b B6Ng01-341G22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,642,706 - 116,642,926)(39,557,919 - 39,558,996)
sequence
gaattcactctgtatactaggctggcctcaaactcagaaatccacctgcc
tttcctcctgagtgctgggattaaaggcatgtgccaccaccacccggctt
gaaaatcatttctagctcactcaattaatatcataccaaagatactataa
gaaagctgctgaaggatatccttcgtgaacatacaacagataatcctccc
agaaatattgacttgtcacatccagcaatagttataaaagggcattaatt
cacagtcaaataaaatttatcctaagaacacaagcctgattaaaatttta
aaaatcactcagtataatttaccatgtcatcaaactttaaaattaaaaac
catatagccatctcaatagatgcagaaaatacaactgacaaaataaagat
taatttgtgatattttaaaactctcagaaaattaagaattgaaaaatatc
tatgaacaacccacaaataatatcacacttaaactttcttcctctaaggt
accaaagaaaggacaaggtgtctgctcttgcgaattcagtttgacattgt
actggtagttctagccagggaaatgaagcaaaaaagaatatgagttgata
tagaagacaaaagatgtgaattggcatagaaaaaataaggttgttcttat
tcatagatgtcatgatcacctccataaaggatcccagctagtagagtgct
tggtgtttgccttgcttatgcaatcctcagaaccaaaaaaaaaaaaaaaa
aaatgtttgctgcaagtaacaaataagttatcaaagtcataagatataag
gtcaatataaaagtcaaataatatcaattagaagttaaaaatcaacaaac
agtatcagtttctttttttttccccgccctccctctggtttagtcttttt
tttgttctttgtttgtttgtttgggttttttgttttttttttcaattttt
ttattaggtatttactcattacattcaaatgctatctcgaaagtccctat
acctccccccgccata
gaattcattttttttaaaaaaggagatattgaacccgatttagtggtaca
tacttgtgatcttagcactcaagaagtggagacaagaagattgggagttt
gaggtcagactggactacataatgagagcctgcttacaaaaacaaaacca
tttcccaagtagcaaattcttgttaaagataggacagtgtattagataat
gtaaggagttaaaacagatatgcctgcctcgaggaactcctactttacag
ttacaaagcaaaaaatatgcaatttcttatgcatatcaaaattgaagatc
attaacaattttatattgtagattagtatattgatatagaatacttaaga
taatatggatctgctataggttaatggctaaaaagaaagaagacagcctg
ggcatggtggtgcacacctttaatccagcacccgggaggcagaggcaggc
agatttctgagtttgagaccagcctgttctacagagtgagttccaggaca
gccagggatacaaagagaaaccctgtctagaacctctcccctctgccccc
cccccccaaaatgacaggagtagaataggccctggctgttgtggaacttg
ctctgtagtgcagactggtcttgaacttccagatctgcctgcctttggcc
cgcaaccctaagcaaaagttccctgatatctatagagtctgggacttggc
aaaaatttctatttgagttgtttagaataaagagctggaattaaaagcat
gtgccaccactgcctggcagtaaaataatttctctaagtatggtccttgt
atcagaaagtagaactgggccttgacattttagctatatattcattttca
tgttttgattaaatttatcaaaacgtaattgttttagagaaaccctatgt
cttagtattcttttgtaatttggtcagttttatagtagtccttgtaattg
ggtcttatagtctacatgtttgggtatgtttaaggtttcattttatgaaa
atataggatactgtatatatactgagtcctatatcaatttctattttgcc
tacttccatacatgtatattagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116642706_116642926
seq2: B6Ng01-341G22.b_65_466 (reverse)

seq1  AGTTTTAAAATATCAC-AAGTAAT------------AGAT----------  27
      |||||||||||||||| || ||||            || |          
seq2  AGTTTTAAAATATCACAAATTAATCTTTATTTTGTCAGTTGTATTTTCTG  50

seq1  -ATAAATAGAG-TTACT-TTTCCTTT----CTTTAAA---TGATGA----  63
       ||  || ||| |  || | |  |||     ||||||   ||||||    
seq2  CATCTATTGAGATGGCTATATGGTTTTTAATTTTAAAGTTTGATGACATG  100

seq1  -TAAATCATTGCAATTGCTTT---------------GGCTT---------  88
       ||||| ||    | || |||               |||||         
seq2  GTAAATTATACTGAGTGATTTTTAAAATTTTAATCAGGCTTGTGTTCTTA  150

seq1  ------ACTTTATTTTACTGTG----------------------------  104
            | ||||||| ||||||                            
seq2  GGATAAATTTTATTTGACTGTGAATTAATGCCCTTTTATAACTATTGCTG  200

seq1  -----GAAAA---AA---------GAGAAT----------------AC--  119
           || ||   ||         ||| ||                ||  
seq2  GATGTGACAAGTCAATATTTCTGGGAGGATTATCTGTTGTATGTTCACGA  250

seq1  ---ATA-----------CATGTTTAAAG---------------ATTA---  137
         |||           | |  ||| ||               ||||   
seq2  AGGATATCCTTCAGCAGCTTTCTTATAGTATCTTTGGTATGATATTAATT  300

seq1  --------TAGAAA-----------CCAGGCAGTGGTGGCACATGCCTTT  168
              ||||||           || ||  ||||||||||||||||||
seq2  GAGTGAGCTAGAAATGATTTTCAAGCCGGGTGGTGGTGGCACATGCCTTT  350

seq1  AATCCCAGCACTTGGGAAGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCC  218
      ||||||||||||  || || | |||||||  |||||||||||| ||||||
seq2  AATCCCAGCACTCAGG-AGGAAAGGCAGGTGGATTTCTGAGTTTGAGGCC  399

seq1  AGC  221
      |||
seq2  AGC  402

seq1: chrX_39557919_39558996
seq2: B6Ng01-341G22.g_66_1141

seq1  GAATTCATTTTTTTTAAAAAAGGAGATATTGAACCCGATTTAGTGGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTTAAAAAAGGAGATATTGAACCCGATTTAGTGGTACA  50

seq1  TACTTGTGATCTTAGCACTCAAGAAGTGGAGACAAGAAGATTGGGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGATCTTAGCACTCAAGAAGTGGAGACAAGAAGATTGGGAGTTT  100

seq1  GAGGTCAGACTGGACTACATAATGAGAGCCTGCTTACAAAAACAAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGACTGGACTACATAATGAGAGCCTGCTTACAAAAACAAAACCA  150

seq1  TTTCCCAAGTAGCAAATTCTTGTTAAAGATAGGACAGTGTATTAGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGTAGCAAATTCTTGTTAAAGATAGGACAGTGTATTAGATAAT  200

seq1  GTAAGGAGTTAAAACAGATATGCCTGCCTCGAGGAACTCCTACTTTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGTTAAAACAGATATGCCTGCCTCGAGGAACTCCTACTTTACAG  250

seq1  TTACAAAGCAAAAAATATGCAATTTCTTATGCATATCAAAATTGAAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGCAAAAAATATGCAATTTCTTATGCATATCAAAATTGAAGATC  300

seq1  ATTAACAATTTTATATTGTAGATTAGTATATTGATATAGAATACTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATTTTATATTGTAGATTAGTATATTGATATAGAATACTTAAGA  350

seq1  TAATATGGATCTGCTATAGGTTAATGGCTAAAAAGAAAGAAGACAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGGATCTGCTATAGGTTAATGGCTAAAAAGAAAGAAGACAGCCTG  400

seq1  GGCATGGTGGTGCACACCTTTAATCCAGCACCCGGGAGGCAGAGGCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTGGTGCACACCTTTAATCCAGCACCCGGGAGGCAGAGGCAGGC  450

seq1  AGATTTCTGAGTTTGAGACCAGCCTGTTCTACAGAGTGAGTTCCAGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGAGTTTGAGACCAGCCTGTTCTACAGAGTGAGTTCCAGGACA  500

seq1  GCCAGGGATACAAAGAGAAACCCTGTCTAGAACCTCTCCCCTCTGCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGATACAAAGAGAAACCCTGTCTAGAACCTCTCCCCTCTGCCCCC  550

seq1  CCCCCCCAAAATGACAGGAGTAGAATAGGCCCTGGCTGTTGTGGAACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAAAATGACAGGAGTAGAATAGGCCCTGGCTGTTGTGGAACTTG  600

seq1  CTCTGTAGTGCAGACTGGTCTTGAACTTCCAGATCTGCCTGCCTTTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGTGCAGACTGGTCTTGAACTTCCAGATCTGCCTGCCTTTGGCC  650

seq1  CGCAACCCTAAGCAAAAGTTCCCTGATATCTATAGAGTCTGGGACTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACCCTAAGCAAAAGTTCCCTGATATCTATAGAGTCTGGGACTTGGC  700

seq1  AAAAATTTCTATTTGAGTTGTTTAGAATAAAGAGCTGGAATTAAAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTCTATTTGAGTTGTTTAGAATAAAGAGCTGGAATTAAAAGCAT  750

seq1  GTGCCACCACTGCCTGGCAGTAAAATAATTTCTCTAAGTATGGTCCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACTGCCTGGCAGTAAAATAATTTCTCTAAGTATGGTCCTTGT  800

seq1  ATCAGAAAGTAGAACT-GGCCTTGACATTTTAGCTATATATTCATTTTCA  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGTAGAACTGGGCCTTGACATTTTAGCTATATATTCATTTTCA  850

seq1  TGTTTTGATTAAA-TTATCAAAACGTAAT--GTTTAGAGAAA-CCTATGT  895
      ||||||||||||| |||||||||||||||   |||||||||| |||||||
seq2  TGTTTTGATTAAATTTATCAAAACGTAATTGTTTTAGAGAAACCCTATGT  900

seq1  CTTAGTATTC-TTTGTAA-TTGGTCAGTTTTATAGTAGTCCTTGTAATT-  942
      |||||||||| ||||||| |||||||||||||||||||||||||||||| 
seq2  CTTAGTATTCTTTTGTAATTTGGTCAGTTTTATAGTAGTCCTTGTAATTG  950

seq1  GGTCTTATAGTCTTACATGTTTGGTAATGTTTTAAGGTTTTCATTTTATG  992
      |||||||||||| |||||||||||  ||| ||||||| ||||||||||||
seq2  GGTCTTATAGTC-TACATGTTTGGGTATG-TTTAAGG-TTTCATTTTATG  997

seq1  AAAATATAAGATACTGTTAATAATAATACTGAGTTCTTATTAATTAAATT  1042
      |||||||| ||||||||  ||    ||||||||| |    ||  | ||||
seq2  AAAATATAGGATACTGTATAT----ATACTGAGTCC----TATATCAATT  1039

seq1  TCTATTTTTGCCTACTT-CATACATGTATA-TAGTGGG  1078
      |||| |||||||||||| |||||||||||| |||||||
seq2  TCTA-TTTTGCCTACTTCCATACATGTATATTAGTGGG  1076