BAC Information

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BAC

Clone NameB6Ng01-343D14
ChromosomeX (Build37)
Map Location 110,866,101 - 111,017,659
singlet/doubletdoublet
Overlap geneDach2
Upstream geneLOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343D14.bB6Ng01-343D14.g
ACCGA126058GA126059
length1,1071,092
definitionB6Ng01-343D14.b B6Ng01-343D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,016,521 - 111,017,659)(110,866,101 - 110,867,202)
sequence
gaattccatgaatttgagatataacaaggggtatagatggtaggaactag
agggttgaaagggaaaattatataattacattttaatttcaaaaaattaa
tgtcataaaaatggcaccacaggtctatagcatttgtgaatatatacgta
aatactcttgctaccacacaaacacacacacaacctgtatatggcatgta
tagaaagacaattatgttgtgatcctttgaggattatatcaggaatataa
agtccagctcaaaataaaaatatttgtaaacataatttgaaaaataaaat
tgaggtcaagaactagaggatcaccccaggaaactatttgacaaattcta
atatatcttctaatttaagaaaatcttagtgaacttatttagcctgataa
agaaaatatattttacaaaatagagataatctaaaattcctttctctttt
ggttatattattaggacaaataaaatataatttcttttaccagttatatt
aaatatggttccaaaatgagatgagacaagtttataagttttcttttgtg
agattaattcacatcttatatatgattttttttttacaacacacgcagac
aagtaggtatttctatgtttttattttaactcccaacgctcacattcaaa
acatgtttccttttatttaaacttgccacagaaattggaaattgctttgg
aggctcttgggccaagcccttttcctaaacagactcccaattgctgtcaa
taaattctggtgggagaaaagagctttgttgaaaatctaccttctttcat
cttgcaacttgaggttacattatgataattgctaacaagcaaataattgc
tgtatttttgtttctcttccagtaaaaatcccttcaagaattctgctgca
tcagttattatcagccccccttggtatggggctaattaactacctgtcat
gaggttatacatttcaggaggcttgttattcattttagagtagcagagtg
cattccctttcatttagctgatggctgatttcagtaattactgagatact
catatactttgtttgttttttcttgtattttttgggctcaggactttcta
tgtcttt

gaattctcttttgaaatattttgagtttattatttatatagctaaaccct
aaatttcataatcattttaaggaaggaatacatacatgattcaaatagta
tatattaacatattgctagtactaagtatcaatgatactacaaaattcat
atgatttgtcatcttagtgattttcatgattttggccatcatagcaaatc
tttcttatgtaacagaagtttataaaataaatataagttgttggaatatg
ttagtcatttatgtacttttatgcatttctttaggtattttgcatgaaac
tatacccagttccctttttcatttttagttatgatgcccaacaatcgaga
agagcttattgttgaccaagataatggacaaagcataaaaaaattccaga
gggataataaaggtaaaatgattttggcttatttgatatgtgtgtgaata
ttagacactaattcagtactgcagtagtgtatatcttattggtgtttatc
caagtcagaatagattaatcctggctttggataaattcttttgcccatga
aaatagtttgtacagatttttgtttggtgttgtagatttgaaaccaatct
taaatttgttaatgcatgtggttaaaaattatcactctgttttcactgtg
ccttctcaagatttatgtaatatatatgtaacaattttaaaatatagtta
tatgactcactatttaaaatttacattcacagaatcagagttgttgtgat
gacaattgctgctcttttatgtatttcaaacattttaaaggcatatgtta
atttgagcatttaaattaaatcttaccaagaaatcaattgaatacttatt
taggtactgattaaaatggcctcaaacttacttattatttgctcaagcat
gtatcttaacatatatctttgtagaaaataagaagtaaagaaatttcaag
tgattcttccctgaactgaaagctaagacataaaataaaggaggatattt
tggttataagctggtgcattattgctgtacactgcattgtatagtagctt
acacacacacacaaatacacacacacacacacatacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_111016521_111017659
seq2: B6Ng01-343D14.b_47_1153 (reverse)

seq1  AAAGACATAGAAAAGTCCTGGAGCACAAAAAAAAAAAAAAAAAAAAAAAA  50
      |||||||||| |||||||| |||| |            |||||| | || 
seq2  AAAGACATAG-AAAGTCCT-GAGCCC------------AAAAAATACAAG  36

seq1  AAAAAAAAAAAAAAGTATATTGAAGTTATCTTCAGTTATTTACTGAAATC  100
      |||||| ||| |||||||| |||   |||| |||| || |||||||||||
seq2  AAAAAACAAACAAAGTATA-TGA--GTATC-TCAG-TAATTACTGAAATC  81

seq1  AGCCATTCAGCTTAAATGAAAAGGGAATGCACTCTGCTAACTTCTTAAAA  150
      ||||| ||||| |||||| ||||||||||||||||||| |||   |||||
seq2  AGCCA-TCAGC-TAAATG-AAAGGGAATGCACTCTGCT-ACT--CTAAAA  125

seq1  TGAATTAACAAGCCTTCCCTGAAATTGTTATTAACCTCATGACAGGTAGT  200
      |||| ||||||||||  ||||||| |||   |||||||||||||||||||
seq2  TGAA-TAACAAGCCT--CCTGAAA-TGT--ATAACCTCATGACAGGTAGT  169

seq1  TAATTAGCCCCATACCAAGGGGGGCTGATAATAACTGATGCAGCAGAATT  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAATTAGCCCCATACCAAGGGGGGCTGATAATAACTGATGCAGCAGAA-T  218

seq1  TCTTGAAGGGATTTTTACTGGAAGAGAAACAAAAATACAGCAATTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGGGATTTTTACTGGAAGAGAAACAAAAATACAGCAATTATTTG  268

seq1  CTTGTTAGCAATTATCATAATGTAACCTCAAGTTGCAAGATGAAAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGCAATTATCATAATGTAACCTCAAGTTGCAAGATGAAAGAAGG  318

seq1  TAGATTTTCAACAAAGCTCTTTTCTCCCACCAGAATTTATTGACAGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTCAACAAAGCTCTTTTCTCCCACCAGAATTTATTGACAGCAAT  368

seq1  TGGGAGTCTGTTTAGGAAAAGGGCTTGGCCCAAGAGCCTCCAAAGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCTGTTTAGGAAAAGGGCTTGGCCCAAGAGCCTCCAAAGCAATT  418

seq1  TCCAATTTCTGTGGCAAGTTTAAATAAAAGGAAACATGTTTTGAATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTCTGTGGCAAGTTTAAATAAAAGGAAACATGTTTTGAATGTGA  468

seq1  GCGTTGGGAGTTAAAATAAAAACATAGAAATACCTACTTGTCTGCGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGGGAGTTAAAATAAAAACATAGAAATACCTACTTGTCTGCGTGTG  518

seq1  TTGTAAAAAAAAAATCATATATAAGATGTGAATTAATCTCACAAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAAAAAATCATATATAAGATGTGAATTAATCTCACAAAAGAAA  568

seq1  ACTTATAAACTTGTCTCATCTCATTTTGGAACCATATTTAATATAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAACTTGTCTCATCTCATTTTGGAACCATATTTAATATAACTGG  618

seq1  TAAAAGAAATTATATTTTATTTGTCCTAATAATATAACCAAAAGAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAATTATATTTTATTTGTCCTAATAATATAACCAAAAGAGAAAG  668

seq1  GAATTTTAGATTATCTCTATTTTGTAAAATATATTTTCTTTATCAGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAGATTATCTCTATTTTGTAAAATATATTTTCTTTATCAGGCTA  718

seq1  AATAAGTTCACTAAGATTTTCTTAAATTAGAAGATATATTAGAATTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTCACTAAGATTTTCTTAAATTAGAAGATATATTAGAATTTGTC  768

seq1  AAATAGTTTCCTGGGGTGATCCTCTAGTTCTTGACCTCAATTTTATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTCCTGGGGTGATCCTCTAGTTCTTGACCTCAATTTTATTTTT  818

seq1  CAAATTATGTTTACAAATATTTTTATTTTGAGCTGGACTTTATATTCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATGTTTACAAATATTTTTATTTTGAGCTGGACTTTATATTCCTG  868

seq1  ATATAATCCTCAAAGGATCACAACATAATTGTCTTTCTATACATGCCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCCTCAAAGGATCACAACATAATTGTCTTTCTATACATGCCATA  918

seq1  TACAGGTTGTGTGTGTGTTTGTGTGGTAGCAAGAGTATTTACGTATATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTGTGTGTGTGTTTGTGTGGTAGCAAGAGTATTTACGTATATAT  968

seq1  TCACAAATGCTATAGACCTGTGGTGCCATTTTTATGACATTAATTTTTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATGCTATAGACCTGTGGTGCCATTTTTATGACATTAATTTTTTG  1018

seq1  AAATTAAAATGTAATTATATAATTTTCCCTTTCAACCCTCTAGTTCCTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATGTAATTATATAATTTTCCCTTTCAACCCTCTAGTTCCTAC  1068

seq1  CATCTATACCCCTTGTTATATCTCAAATTCATGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  CATCTATACCCCTTGTTATATCTCAAATTCATGGAATTC  1107


seq1: chrX_110866101_110867202
seq2: B6Ng01-343D14.g_67_1158

seq1  GAATTCTCTTTTGAAATATTTTGAGTTTATTATTTATATAGCTAAACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGAAATATTTTGAGTTTATTATTTATATAGCTAAACCCT  50

seq1  AAATTTCATAATCATTTTAAGGAAGGAATACATACATGATTCAAATAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCATAATCATTTTAAGGAAGGAATACATACATGATTCAAATAGTA  100

seq1  TATATTAACATATTGCTAGTACTAAGTATCAATGATACTACAAAATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAACATATTGCTAGTACTAAGTATCAATGATACTACAAAATTCAT  150

seq1  ATGATTTGTCATCTTAGTGATTTTCATGATTTTGGCCATCATAGCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGTCATCTTAGTGATTTTCATGATTTTGGCCATCATAGCAAATC  200

seq1  TTTCTTATGTAACAGAAGTTTATAAAATAAATATAAGTTGTTGGAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATGTAACAGAAGTTTATAAAATAAATATAAGTTGTTGGAATATG  250

seq1  TTAGTCATTTATGTACTTTTATGCATTTCTTTAGGTATTTTGCATGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATTTATGTACTTTTATGCATTTCTTTAGGTATTTTGCATGAAAC  300

seq1  TATACCCAGTTCCCTTTTTCATTTTTAGTTATGATGCCCAACAATCGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCAGTTCCCTTTTTCATTTTTAGTTATGATGCCCAACAATCGAGA  350

seq1  AGAGCTTATTGTTGACCAAGATAATGGACAAAGCATAAAAAAATTCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTATTGTTGACCAAGATAATGGACAAAGCATAAAAAAATTCCAGA  400

seq1  GGGATAATAAAGGTAAAATGATTTTGGCTTATTTGATATGTGTGTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATAAAGGTAAAATGATTTTGGCTTATTTGATATGTGTGTGAATA  450

seq1  TTAGACACTAATTCAGTACTGCAGTAGTGTATATCTTATTGGTGTTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACTAATTCAGTACTGCAGTAGTGTATATCTTATTGGTGTTTATC  500

seq1  CAAGTCAGAATAGATTAATCCTGGCTTTGGATAAATTCTTTTGCCCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGAATAGATTAATCCTGGCTTTGGATAAATTCTTTTGCCCATGA  550

seq1  AAATAGTTTGTACAGATTTTTGTTTGGTGTTGTAGATTTGAAACCAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTGTACAGATTTTTGTTTGGTGTTGTAGATTTGAAACCAATCT  600

seq1  TAAATTTGTTAATGCATGTGGTTAAAAATTATCACTCTGTTTTCACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGTTAATGCATGTGGTTAAAAATTATCACTCTGTTTTCACTGTG  650

seq1  CCTTCTCAAGATTTATGTAATATATATGTAACAATTTTAAAATATAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAAGATTTATGTAATATATATGTAACAATTTTAAAATATAGTTA  700

seq1  TATGACTCACTATTTAAAATTTACATTCACAGAATCAGAGTTGTTGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTCACTATTTAAAATTTACATTCACAGAATCAGAGTTGTTGTGAT  750

seq1  GACAATTGCTGCTCTTTTATGTATTTCAAACATTTTAAAGGCATATGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGCTGCTCTTTTATGTATTTCAAACATTTTAAAGGCATATGTTA  800

seq1  ATTTGAGCATTTAAATTAAATCTTACCAAGAAATCAATTGAATACTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCATTTAAATTAAATCTTACCAAGAAATCAATTGAATACTTATT  850

seq1  TAGGTACTGATTAAAATGGCCTCAAACTTACTTATTATTTGCTCAAGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACTGATTAAAATGGCCTCAAACTTACTTATTATTTGCTCAAGCAT  900

seq1  GTATCTTAACATATATCTTTGTAGAAAATAAGAAGTAAAGAAATTTCAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTAACATATATCTTTGTAGAAAATAAGAAGTAAAGAAATTTCAAG  950

seq1  TGATTCTTCCCTGAACTGAAAGCTAAGACATAAAATAAA-GAGGATATTT  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGATTCTTCCCTGAACTGAAAGCTAAGACATAAAATAAAGGAGGATATTT  1000

seq1  T-GTTATAAGCT-GTGCATTATTGCTGTTACACTGCATTGTATAGTAGCT  1047
      | |||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TGGTTATAAGCTGGTGCATTATTGCTG-TACACTGCATTGTATAGTAGCT  1049

seq1  TACACACACACACACACACACACACACACACACACACACACACACATACA  1097
      |||||||||||||| | ||||||||||||||||| ||||||||       
seq2  TACACACACACACAAATACACACACACACACACATACACACAC-------  1092

seq1  CACAC  1102
           
seq2  -----  1092


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