BAC Information

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BAC

Clone NameB6Ng01-346L18
ChromosomeX (Build37)X (Build37)
Map Location 31,912,349 - 31,913,3634,662,198 - 4,662,930
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732
Downstream geneLOC100040743, LOC385298, LOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346L18.bB6Ng01-346L18.g
ACCGA128550GA128551
length1,0631,092
definitionB6Ng01-346L18.b B6Ng01-346L18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,912,349 - 31,913,363)(4,662,198 - 4,662,930)
sequence
gaattcactgacagaaaggaaaggtgatgctcaaagtctcagggcagtgc
tacaatgcataggcaagcaataccatttaaatggagagatttaaaaaaat
catttcttcacccataaaccagaaccaattattcaatatggccaagtacc
atgttttattagagttatttctgaattagatcattgaacaggattctaac
ctaaataacaaattttatctaaaacattttctagaccaaaaagcatgctt
tgagccctccttaaataaaaaggcccatagtgtatgaaactaatcaacca
tagatcctatatttactccaccaatcctcaggacagtttatactctttgt
cctagttgggattttatttatgtgaacagacattatgaccatggcaagta
ttataaaggacaacatttaattggggccggcttacaggttcagaggttca
ggccattatcattgtattagtcagtgttctctggagccccttcaagatct
aacacaaaagcctatgactccagtgtcaagatccaaaccaaaggcacatt
gtcttcatgcttcaatatcaggctcacaggtttgccctccatttctagat
tgaagttcattgcaaatatactcaagttgacaaccaagaatagtcatcac
aatgtgtaaggagagagtaaacatccttatattcctctgtttagtgaaat
tgcttagagtttttctccatttaaattgatattggctatatttaggcttg
ctgtaaactgcctttatagtgtggaggtatatccagttttacccctagtt
tcttcaggactgttattttgaaagaattttaaacttaggcagtttctgca
gcaaagtggtagtaaagcacatctttaatcccagcagctgggaagcagag
gcagttggatctctgtgagttcaaggccatcctggtctacagaatgagat
ccaagactgcctggactacacagagaaaccctgcctcaaaaaccaaaacc
aatgagataaacaaacacaattttttttttctagatctaatgaaatgatc
ttctgtctgtctt
gaattccttgtttcaaacagcaattggttattgcagaatattgatatttg
atctattgcataccatcattataaataaaattgatccttatcctaagata
agttaaaaattgcttatgcatgcttttgtatcttcatgcatgcttacatc
ccatttactgtatttaaaaacaacccttctatgggagaaaagtatatgta
aattaaatcacatgcttatcctgtttcagcacaggtaattaaattgtgtg
ctgaagatggtgtttaaaaatgttgaataattaaactttaagttgtatat
taatagttaatattatatctcagagcttgcaattgcttatgaaacttata
agaaaaaaatactgtttctttaagaaaattgtttttgggcagttaagaaa
ttgtcctaagttgcctggaaaagaaccccaggatttgcttttgtgttata
gaggtttacataaagctttaactgataaagattacagatagctcctgaaa
agatacaaactcaggattcttatatttatttgggttttaaaagatagcta
tttgtagagacaacttaaagactttctctaatttctgattaataaataaa
taaattttacacatgtgactataatgacttttcaagcattctagttacaa
tctctcttcaagagaaacaattgaaagtgtaattagtcactgttcatgtt
atattaaaactgactaacagttcagtatataaaattttgatgaaaataca
agattgtattttgatgcgtgagcaccccttttatattcaacatattagag
tacatacatcattacctggctcctattcaaaaaaaattcctaagctgaag
ttagccactggcaagaagactaaacagataagtcttggctgtttattttg
taaatctaaatagtatatatgactgggctgaaagccaccctagaaacaaa
tgttctgttcttgttagtcaaaacattcatgacagttttgccatcagatg
aatgtgactcatctgactggccttctataatcctcaaggacagacaattg
tagacgtgcccatcacacctctcaaatcctattataaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_31912349_31913363
seq2: B6Ng01-346L18.b_44_1054

seq1  GAATTCACTGACAGAAAGGAAAGGTGATGCTCAAAGTCTCAGGGCAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACAGAAAGGAAAGGTGATGCTCAAAGTCTCAGGGCAGTGC  50

seq1  TACAATGCATAGGTAAGCAATACCATTTAAATGGAGAGATTTAAAAAAAA  100
      ||||||||||||| ||||||||||||||||||||||||||||  ||||||
seq2  TACAATGCATAGGCAAGCAATACCATTTAAATGGAGAGATTT--AAAAAA  98

seq1  ATCATTTCTTCACCCATAAACCAGAACCAATTATTCAATATGGCCAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTTCACCCATAAACCAGAACCAATTATTCAATATGGCCAAGTA  148

seq1  CCATGTTTTATTAGAGTTATTTCTGAATTAGATCATTGAACAGGATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTATTAGAGTTATTTCTGAATTAGATCATTGAACAGGATTCTA  198

seq1  ACCTAAATAACAAATTTTATCTAAAACATTTTCTAGACCAAAAAGCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATAACAAATTTTATCTAAAACATTTTCTAGACCAAAAAGCATGC  248

seq1  TTTGAGCCCTCCTTAAATAAAAAGGCCCATAGTGTATGAAACTAATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCCTCCTTAAATAAAAAGGCCCATAGTGTATGAAACTAATCAAC  298

seq1  CATAGATCCTATATTTACTCCACCAATCCTCAGGACAGTTTATACTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATCCTATATTTACTCCACCAATCCTCAGGACAGTTTATACTCTTT  348

seq1  GTCCTAGTTGGGA-TTTATTTATGTGAACAGACATCATGACCATGGCAAG  399
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GTCCTAGTTGGGATTTTATTTATGTGAACAGACATTATGACCATGGCAAG  398

seq1  TATTATAAAGGACAACATTTAATTGGGGCCGGCTTACAGGTTCAGAGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAAGGACAACATTTAATTGGGGCCGGCTTACAGGTTCAGAGGTT  448

seq1  CAGGCCATTATCATTGTATTAGTCAGTGTTCTCTGGAGCCCCTTCAAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATTATCATTGTATTAGTCAGTGTTCTCTGGAGCCCCTTCAAGAT  498

seq1  CTAACACAAAAGCCTATGACTCCAGTGTCAAGATCCAAACCAAAGGCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAAAAGCCTATGACTCCAGTGTCAAGATCCAAACCAAAGGCACA  548

seq1  TTGTCTTCATGCTTCAATATCAGGCTCACAGGTTTGCCCTCCATTTCTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCATGCTTCAATATCAGGCTCACAGGTTTGCCCTCCATTTCTAG  598

seq1  ATTGAAGTTCATTGCAAATATACTCAAGTTGACAACCAAGAATAGTCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTTCATTGCAAATATACTCAAGTTGACAACCAAGAATAGTCATC  648

seq1  ACAGTGTGTATGGAGAGAGTAAACATCCTTATATTCCTCTGTTTAGTGAA  699
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGTAAGGAGAGAGTAAACATCCTTATATTCCTCTGTTTAGTGAA  698

seq1  AATGCTTAGAGTTTTTCTCCATTTAAATTGATATTGGCTATATATAGGCT  749
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGCTTAGAGTTTTTCTCCATTTAAATTGATATTGGCTATATTTAGGCT  748

seq1  TGCTGTAAACTGCCTTTATAGTGTGGAGGTATATCCAGTTTTACCCCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAAACTGCCTTTATAGTGTGGAGGTATATCCAGTTTTACCCCTAG  798

seq1  TTTCTTCAGGACTGTTATTTTGAAAGAATTTTAAACTTAGGCAGTTTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAGGACTGTTATTTTGAAAGAATTTTAAACTTAGGCAGTTTCTG  848

seq1  CAGCAAAGTGGTAGTAAAGCACATCTTTAATCCCAGCAGCTGGGAAGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTGGTAGTAAAGCACATCTTTAATCCCAGCAGCTGGGAAGCAG  898

seq1  AGGCAGTTGGATCTCTGTGAGTTCAAGGCTATCCTGGTCTACAGAATGAG  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGCAGTTGGATCTCTGTGAGTTCAAGGCCATCCTGGTCTACAGAATGAG  948

seq1  ATCCAAGACTGCCTGGACTACACAGAGAAACCCTGCCTCAAAAAAACCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||   | |
seq2  ATCCAAGACTGCCTGGACTACACAGAGAAACCCTGCCTCAAAAA---CCA  995

seq1  AAACAAATGAGATAAA  1015
      |||| |||||||||||
seq2  AAACCAATGAGATAAA  1011

seq1: chrX_4662198_4662930
seq2: B6Ng01-346L18.g_432_1158

seq1  TTCTTTAAGAAAATTGTTTTTGGGCAGTTAAGAAATTGTCCTAAGTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGAAAATTGTTTTTGGGCAGTTAAGAAATTGTCCTAAGTTGCC  50

seq1  TGGAAAAGAACCCCAGGATTTGCTTTTGTGTTATAGAGGTTTACATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGAACCCCAGGATTTGCTTTTGTGTTATAGAGGTTTACATAAAG  100

seq1  CTTTAACTGATAAAGATTACAGATAGCTCCTGAAAAGATACAAACTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTGATAAAGATTACAGATAGCTCCTGAAAAGATACAAACTCAGG  150

seq1  ATTCTTATATTTATTTGGGTTTTAAAAGATAGCTATTTGTAGAGACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATATTTATTTGGGTTTTAAAAGATAGCTATTTGTAGAGACAACT  200

seq1  TAAAGACTTTCTCTAATTTCTGATT----AATAAATAAATTTTACACATG  246
      |||||||||||||||||||||||||    |||||||||||||||||||||
seq2  TAAAGACTTTCTCTAATTTCTGATTAATAAATAAATAAATTTTACACATG  250

seq1  TGACTATAATGACTTTTCAAGCATTCTAGTTACAATCTCTCTTCAAGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATAATGACTTTTCAAGCATTCTAGTTACAATCTCTCTTCAAGAGA  300

seq1  AACAATTGAAAGTGTAATTAGTCACTGTTCATGTTATATTAAAACTGACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGAAAGTGTAATTAGTCACTGTTCATGTTATATTAAAACTGACT  350

seq1  AACAGTTCAGTATCTAAAATTTTGATGAAAATACAAGATTGTATTTTGAT  396
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCAGTATATAAAATTTTGATGAAAATACAAGATTGTATTTTGAT  400

seq1  GCGTGAGCACCCCTTTTATATTCAACATATTAGAGTACATACATCATTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAGCACCCCTTTTATATTCAACATATTAGAGTACATACATCATTAC  450

seq1  CTGGCTCCTATTCAAAAAAAAATTCCTAAGCTGAAGTTAGCCACTGGCAA  496
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCTATTC-AAAAAAAATTCCTAAGCTGAAGTTAGCCACTGGCAA  499

seq1  GAAAGACTAAACAGATAAGTCTTGGCTGTTTATTTTGTAAATCTAAATAG  546
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAGACTAAACAGATAAGTCTTGGCTGTTTATTTTGTAAATCTAAATAG  548

seq1  TATATATGACTGGGCTGAAAAGCCACCCTAGAAAACAAATGTTCTGTTCT  596
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TATATATGACTGGGCTG-AAAGCCACCCTAG-AAACAAATGTTCTGTTCT  596

seq1  TGTTAGTCAAAAACATTCATGACAGTTTTGCCATCAGATGAATGTGACTC  646
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTC-AAAACATTCATGACAGTTTTGCCATCAGATGAATGTGACTC  645

seq1  ATCTGACTGGCCTTCCTTATAATCCTCAAGGACAAGAC-ATTGTAGAACG  695
      |||||||||||||||  |||||||||||||||| |||| ||||||| |||
seq2  ATCTGACTGGCCTTC--TATAATCCTCAAGGAC-AGACAATTGTAG-ACG  691

seq1  TGCCCATCGCA-CTCTCAAATCCTATTTAATTAAACAAA  733
      |||||||| || |||||||||||||||    ||||||||
seq2  TGCCCATCACACCTCTCAAATCCTATT---ATAAACAAA  727