BAC Information

Click to search

BAC

Clone NameB6Ng01-347E13
ChromosomeX (Build37)
Map Location 71,732,680 - 71,818,655
singlet/doubletdoublet
Overlap geneLOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1
Upstream geneBgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456
Downstream geneOlfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347E13.bB6Ng01-347E13.g
ACCGA128932GA128933
length1,226584
definitionB6Ng01-347E13.b B6Ng01-347E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,817,416 - 71,818,655)(71,732,680 - 71,733,263)
sequence
gaattcaactgcagcactctactttgaagtgaaaagctggcatattgctc
catcttatgtacctgttagttaaatacataccaaaatactgctcagtacg
gagtataagtggctgtgaaactacagtgataaccaccatctatgtcaaac
aaaactgtaatcaaaatcagctttcttatttcattgatgttactttgagc
ctcagaaatgtcacattcccccaaatgaactctttaaatagcaattcaac
tgtcacaaactccttactgcttaaaaaatttaagattagatttattgatt
ttctttttatgtatataggtattttgtctgcatgtatatacctgtactac
atgtatgcctgatgtctgctgaggccagaaaacagtgctatatcccatgg
aactgaagttatggatggttatgagttgccatgtggatgcgagaatgaaa
cctggattctctgcaagaacaacatttgttcttaatctcggagccatctc
tccattatctcttattgacttttgattttctgaatacctagactccttgg
aaaccttccccttttctcattcctgtaatggaagggagcataggaagaaa
tcagagaccgacaataaagattttgtttatatttttggatcaaggcaagg
agaaagtcaatttctcttaagtttaggaaacacatcagacaagacattgc
tcatttaaccatccactgcccctgagtctgttccaggtctgtcctattca
tttcctgctcctgctatgtgtcttagtccagccttttgtcccccgttctc
aaggccaactgttgccaactgtggaacatgcaaaaatgagaaattgacat
ttattcagaaactcaaaaggtaaacaggctcacatgatttactaattctc
ctaatatgtaccagctattgttgaaaaagcagaattggacaccattcttg
ccattctggaatccatagacaggcaatgtagacagaacaataatcaaaga
attctagaagtcattgatgaacagcattgttatggaagcttggagggctt
gtgataggcataaggaagggactaattcaccagaggttagagaagatatc
cagaacagggtgccacaagttggggtgtttacaaatagctaaactagtaa
gaagcagctactgcagttagtatctcttcctctctggttctgtttatcat
gactgcctgatcctcaagggttggag
gaattcactcaccatcttgtgaaaacccacagcagagtctctgttcagag
gacccaggctccagctgtggttaccacataagggtttttatccatgaaaa
ataaatgaatcaagtctgtggaaaaaaaatttctgatgcagatccaggca
tcgtttgggttgcttattacagagtaaatagaaggtcttgagaattttgg
tacagttacaagaatagtgtaagtttctatctaaattcttatgaaagttt
atattttacataggtttacatcactttgactatgatttaatactgtaatt
gtcatataattacactgtactctttcaactacgcagtattatgtctgtgt
tagttacttttgcataggtatgtgctgattccttgctggcaggtccaggt
gagaggagaggggtcccagtcccaccagggtctctccaggacctctctgg
ggttgtcgactgcccaaaacaatcacacctgggctgggagtctgtcaaag
caggaactcaaatttatggtgtcagcctcttgcttatatgagttcaaaac
atagggagggggaatttttggtggggtaggatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71817416_71818655
seq2: B6Ng01-347E13.b_50_1275 (reverse)

seq1  CTCCAAACCCTGAGGATTTCA-GCAGTCAATGGATTATAAACAGGATACC  49
      |||||| || ||||||  ||| ||||||     || ||||||||   |||
seq2  CTCCAACCCTTGAGGA--TCAGGCAGTC-----ATGATAAACAG--AACC  41

seq1  AGAGAGGAAGAG-TACATAACTTGCAGTAGCTGCTTTCTTTCCTGTGTCT  98
      |||||||||||| ||| |||| |||||||||||| ||||| |  ||   |
seq2  AGAGAGGAAGAGATAC-TAAC-TGCAGTAGCTGC-TTCTTACTAGT---T  85

seq1  TAGCTATTTGTAAACACCCCAACTTTGTGGCACCCTGTTCTGGATATCTT  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGCTATTTGTAAACACCCCAAC-TTGTGGCACCCTGTTCTGGATATCTT  134

seq1  CTCTAACCTCTTGGTTGAATTAGTCCCTTCCTTATG-CTATCAC-AGCCC  196
      |||||||||||  | ||||||||||||||||||||| ||||||| |||||
seq2  CTCTAACCTCT--GGTGAATTAGTCCCTTCCTTATGCCTATCACAAGCCC  182

seq1  TCCAAGCTTCCATAACAATGCTGTTCATCAATGACTTCTAGAATTCTTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTTCCATAACAATGCTGTTCATCAATGACTTCTAGAATTCTTTG  232

seq1  ATTATTGTTCTGTCTACATTGCCTGTCTATGGATTCCAGAATGGCAAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTCTGTCTACATTGCCTGTCTATGGATTCCAGAATGGCAAGAA  282

seq1  TGGTGTCCAATTCTGCTTTTTCAACAATAGCTGGTACATATTAGGAGAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCAATTCTGCTTTTTCAACAATAGCTGGTACATATTAGGAGAAT  332

seq1  TAGTAAATCATGTGAGCCTGTTTACCTTTTGAGTTTCTGAATAAATGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATCATGTGAGCCTGTTTACCTTTTGAGTTTCTGAATAAATGTCA  382

seq1  ATTTCTCATTTTTGCATGTTCCACAGTTGGCAACAGTTGGCCTTGAGAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTTTTGCATGTTCCACAGTTGGCAACAGTTGGCCTTGAGAAC  432

seq1  AGGGGACAAAAGGCTGGACTAAGACACATAGCAGGAGCAGGAAATGAATA  496
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACAAAAGGCTGGACTAAGACACATAGCAGGAGCAGGAAATGAATA  482

seq1  GGACAGACCTGGAACAGACTCAGGGGCAGTGGATGGTTAAATGAGCAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACCTGGAACAGACTCAGGGGCAGTGGATGGTTAAATGAGCAATG  532

seq1  TCTTGTCTGATGTGTTTCCTAAACTTAAGAGAAATTGACTTTCTCCTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTGATGTGTTTCCTAAACTTAAGAGAAATTGACTTTCTCCTTGC  582

seq1  CTTGATCCAAAAATATAAACAAAATCTTTATTGTCGGTCTCTGATTTCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCAAAAATATAAACAAAATCTTTATTGTCGGTCTCTGATTTCTT  632

seq1  CCTATGCTCCCTTCCATTACAGGAATGAGAAAAGGGGAAGGTTTCCAAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTCCCTTCCATTACAGGAATGAGAAAAGGGGAAGGTTTCCAAGG  682

seq1  AGTCTAGGTATTCAGAAAATCAAAAGTCAATAAGAGATAATGGAGAGATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGTATTCAGAAAATCAAAAGTCAATAAGAGATAATGGAGAGATG  732

seq1  GCTCCGAGATTAAGAACAAATGTTGTTCTTGCAGAGAATCCAGGTTTCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGAGATTAAGAACAAATGTTGTTCTTGCAGAGAATCCAGGTTTCAT  782

seq1  TCTCGCATCCACATGGCAACTCATAACCATCCATAACTTCAGTTCCATGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCATCCACATGGCAACTCATAACCATCCATAACTTCAGTTCCATGG  832

seq1  GATATAGCACTGTTTTCTGGCCTCAGCAGACATCAGGCATACATGTAGTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGCACTGTTTTCTGGCCTCAGCAGACATCAGGCATACATGTAGTA  882

seq1  CAGGTATATACATGCAGACAAAATACCTATATACATAAAAAGAAAATCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATATACATGCAGACAAAATACCTATATACATAAAAAGAAAATCAA  932

seq1  TAAATCTAATCTTAAATTTTTTAAGCAGTAAGGAGTTTGTGACAGTTGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAATCTTAAATTTTTTAAGCAGTAAGGAGTTTGTGACAGTTGAA  982

seq1  TTGCTATTTAAAGAGTTCATTTGGGGGAATGTGACATTTCTGAGGCTCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTTAAAGAGTTCATTTGGGGGAATGTGACATTTCTGAGGCTCAA  1032

seq1  AGTAACATCAATGAAATAAGAAAGCTGATTTTGATTACAGTTTTGTTTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATCAATGAAATAAGAAAGCTGATTTTGATTACAGTTTTGTTTGA  1082

seq1  CATAGATGGTGGTTATCACTGTAGTTTCACAGCCACTTATACTCCGTACT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGGTGGTTATCACTGTAGTTTCACAGCCACTTATACTCCGTACT  1132

seq1  GAGCAGTATTTTGGTATGTATTTAACTAACAGGTACATAAGATGGAGCAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTATTTTGGTATGTATTTAACTAACAGGTACATAAGATGGAGCAA  1182

seq1  TATGCCAGCTTTTCACTTCAAAGTAGAGTGCTGCAGTTGAATTC  1240
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGCTTTTCACTTCAAAGTAGAGTGCTGCAGTTGAATTC  1226

seq1: chrX_71732680_71733263
seq2: B6Ng01-347E13.g_69_652

seq1  GAATTCACTCACCATCTTGTGAAAACCCACAGCAGAGTCTCTGTTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACCATCTTGTGAAAACCCACAGCAGAGTCTCTGTTCAGAG  50

seq1  GACCCAGGCTCCAGCTGTGGTTACCACATAAGGGTTTTTATCCATGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGCTCCAGCTGTGGTTACCACATAAGGGTTTTTATCCATGAAAA  100

seq1  ATAAATGAATCAAGTCTGTGGAAAAAAAATTTCTGATGCAGATCCAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAATCAAGTCTGTGGAAAAAAAATTTCTGATGCAGATCCAGGCA  150

seq1  TCGTTTGGGTTGCTTATTACAGAGTAAATAGAAGGTCTTGAGAATTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGGGTTGCTTATTACAGAGTAAATAGAAGGTCTTGAGAATTTTGG  200

seq1  TACAGTTACAAGAATAGTGTAAGTTTCTATCTAAATTCTTATGAAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTACAAGAATAGTGTAAGTTTCTATCTAAATTCTTATGAAAGTTT  250

seq1  ATATTTTACATAGGTTTACATCACTTTGACTATGATTTAATACTGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACATAGGTTTACATCACTTTGACTATGATTTAATACTGTAATT  300

seq1  GTCATATAATTACACTGTACTCTTTCAACTACGCAGTATTATGTCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATAATTACACTGTACTCTTTCAACTACGCAGTATTATGTCTGTGT  350

seq1  TAGTTACTTTTGCATAGGTATGTGCTGATTCCTTGCTGGCAGGTCCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTTTTGCATAGGTATGTGCTGATTCCTTGCTGGCAGGTCCAGGT  400

seq1  GAGAGGAGAGGGGTCCCAGTCCCACCAGGGTCTCTCCAGGACCTCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGGGGTCCCAGTCCCACCAGGGTCTCTCCAGGACCTCTCTGG  450

seq1  GGTTGTCGACTGCCCAAAACAATCACACCTGGGCTGGGAGTCTGTCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCGACTGCCCAAAACAATCACACCTGGGCTGGGAGTCTGTCAAAG  500

seq1  CAGGAACTCAAATTTATGGTGTCAGCCTCTTGCTTATATGAGTTCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTCAAATTTATGGTGTCAGCCTCTTGCTTATATGAGTTCAAAAC  550

seq1  ATAGGGAGGGGGAATTTTTGGTGGGGTAGGATGA  584
      ||||||||||||||||||||||||||||||||||
seq2  ATAGGGAGGGGGAATTTTTGGTGGGGTAGGATGA  584