BAC Information

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BAC

Clone NameMSMg01-045C24
ChromosomeX (Build37)
Map Location 117,629,832 - 117,630,285
singlet/doubletsinglet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045C24.T7 (MSMg01no045_c24.b1)MSMg01-045C24.TJ (MSMg01no045_c24.g1)
ACCAG275882AG275883
length660672
length of high quality
(start - end)
523 (51 - 573)453 (55 - 507)
definitionCHROMAT_FILE: MSMg01no045_c24.b1 PHD_FILE: MSMg01no045_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:05 2005CHROMAT_FILE: MSMg01no045_c24.g1 PHD_FILE: MSMg01no045_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACTATATTCAGAAATCCGCGGAATTCTTGTTTTTACAGCTGAGANTAC
TACATTTTGAAAATGACCATATTTTCTGTACCCATTCTCTGTTGAAGGAC
ATCTGGGTTCTTTCCAACTTCTGGGTATTATAAATAAGGCTGCTATGTAC
ATATTGCAGCATGTATTCTTATTAAATGTTGGCGCATCTTCTGGGTGGTA
TAGCTAGATCCTCAGGTAGTACTATGTTCAGTTTTTTGAGGAACCACCAA
ACTGATTTCCAAGTGATTGTACCAGCTCGCAATCCTACCAGCTGCAAATT
GATCCATTCTCATCTCCTTTTACAAAGCTCAAGCCAAGCAGATCAATAAC
CTCCACATAAAACCAGATACACTGAAACTAATAGAAATGAAAGTTGGGAA
GAGCCTCGAGTACATGGGCACTGGGAAAAATTTCCTGAACAGAATGCCAA
TAGTTTATGCTCTAAGATCAAAAATTGACAATGGGACCCCATAAAATTGC
AAGGCTTCAATAAGGGAAAGGACACTGTCATTAGGACAGAAACAATCAAC
AGATTGGGAAACGATGTTTACCAACGCTATATCTAATAGAGGGCTAATAT
CCAATATATACAAAGAGCTCAAGAAGTTAGACCCCATAGAACCAAATAAC
CCTATTAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTCATCAGTCAGATGAGTTTAGGGCAGTACAGTGGTGTTGAGTTC
TTTAATGAGTTCCTGCAGAGTCAGTTGAAGCCAAACCATAAGAAGGAGCC
AAAAGACTAGAACAAATTTCCAGAGTTAATATGAGACCAAGAAAAGCAAA
TCAGTGAGAAACTGAGTGAAGCCACTTTGATGCACCTTGGAGAAGAGTTT
GGGATAAAACAGCTCAGTTGAATAAACCAGTTAGTTCAAAATGAGCTAGA
AAAGGTGAGTTTATTCAGTAGCAAGCCTTTGAGACTCCAATTTTATCTGG
CAAATAAAAGTTACTTTTACAATATGAAACTTCTCAGAACTGTTGTAATG
TTCATACAACTCTATAGTTATGGTTAAAGGTCTAGAAAAGTCTGTCACTG
TAGGTTGATAATGTTTACACTGTACTGCTGGAAAAGTAAAATGCCAGAAA
TAATTCACTGTTGTGTGGAAATATGTCATTGTATGCAGTAATCCATATAT
ACCTATATATGCATATATATATATAATTTTAGAATTTCAATAAGTACTTA
TATTTGTGTTTCATGAACTTCCTACTGCAACAGTATTTGATCTTAGTCTA
TTGGTTAAGACAATTGTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_c24.g1 MSMg01no045_c24.g1 CHROMAT_FILE:
MSMg01no045_c24.g1 PHD_FILE: MSMg01no045_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:05 2005
         (453 letters)



>mm_chrX_117629633_117630485
          Length = 853

 Score =  847 bits (438), Expect = 0.0
 Identities = 450/454 (99%), Gaps = 1/454 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attca-tcagtcagatgagtttagggcagtacagtggtgttgagttctttaatgagttcc 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attcaatcagtcagatgagtttagggcagtacagtggtgttgagttctttaatgagttcc 259

                                                                       
Query: 60  tgcagagtcagttgaagccaaaccataagaaggagccaaaagactagaacaaatttccag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgcagagtcagttgaagccaaaccataagaaggagccaaaagactagaacaaatttccag 319

                                                                       
Query: 120 agttaatatgagaccaagaaaagcaaatcagtgagaaactgagtgaagccactttgatgc 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattaatatgagaccaagaaaagcaaatcagtgagaaactgagtgaagccactttgatgc 379

                                                                       
Query: 180 accttggagaagagtttgggataaaacagctcagttgaataaaccagttagttcaaaatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accttggagaagagtttgggataaaacagctcagttgaataaaccagttagttcaaaatg 439

                                                                       
Query: 240 agctagaaaaggtgagtttattcagtagcaagcctttgagactccaattttatctggcaa 299
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 agctagaaaaggtgagtttattcactagcaagcctttgagactccaattttatctggcaa 499

                                                                       
Query: 300 ataaaagttacttttacaatatgaaacttctcagaactgttgtaatgttcatacaactct 359
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 ataaaagttacttttacaatatgaaacttctcagaactgttgtaatgtccatacaactct 559

                                                                       
Query: 360 atagttatggttaaaggtctagaaaagtctgtcactgtaggttgataatgtttacactgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atagttatggttaaaggtctagaaaagtctgtcactgtaggttgataatgtttacactgt 619

                                             
Query: 420 actgctggaaaagtaaaatgccagaaataattca 453
           ||||||||||||||||||||||||||||||||||
Sbjct: 620 actgctggaaaagtaaaatgccagaaataattca 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)