BAC Information

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BAC

Clone NameMSMg01-045I19
ChromosomeX (Build37)
Map Location 55,696,352 - 55,696,593
singlet/doubletsinglet
Overlap genenone
Upstream geneGm364, Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
Downstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045I19.T7 (MSMg01no045_i19.b1)MSMg01-045I19.TJ (MSMg01no045_i19.g1)
ACCAG276156AG276157
length770830
length of high quality
(start - end)
242 (157 - 398)---
definitionCHROMAT_FILE: MSMg01no045_i19.b1 PHD_FILE: MSMg01no045_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:32 2005CHROMAT_FILE: MSMg01no045_i19.g1 PHD_FILE: MSMg01no045_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCCNNNNNNNNNNNNCCCCAATGTGGTCGTCCCACTAATAATTGCGGC
CGCTAAAAGACTCCTATTTCAAAATCGACCGCGGAATTCACTTATTACCT
TGGAGAGTCAGTGGTAGTTAGAAACGAAAAGCCCCGAAAATAGCTAAGTA
TTTGTCAGATACAGAGGACTTAGTTAAAAGTTGAACATTTTCATTAAAGT
GATGGGATTTTCCCAGAATGCCTTGAGGCTCAAGAGTGGCAGGGGAAACT
TAAGTGGACATGTGTTTATCTCTGAGATGGCAAGATGCCTTCACTTGAGA
ATAACACTTGCAGTCTCTAAGGAAAATCATGAAGGCAGATTTGCTTGGTT
ATTTGCAAGGAACAACTTAGTTGGCCTAGACTTTTGAGCTATAGTGCTCT
AGTTCATTACTGATGTCTGCAAAGTACCAAGGTCCAGCAGGCCCAGTAGA
GCCATGCAAGCTATTTACTGAAGGCTAATATTCCTTGTTATGTCATAGTG
TATTTCTTAGGATTGTCTCACACATCTATTTGTCCCATCATTTTAACTAT
AAAGAAGTGGAGTCGCAATTTTTAAATTTTATCTTCTATCAGTATTCGCA
ACTGCTGCCACCTTTATCATATACTATGATCGGATGCTATGAAAATGTTG
GATAGATTAAATAAAGCGGAATGGACCTTTGCGTTAAATCTCTCTCTTTA
ACCCTTTTCCTCTTTTCCCC
TTCTCCTCCCTCCCCTTCCCCTTTTCCCCCCCCACCTTTTTTCCTTCTAA
CTTTTTTTCTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCCGAAATCTTGTGGTTAATGGGA
ATCAAACAATCTATTAGTCTTGAATCTTCTAAATGAGCATTCCCTTCCCT
CTCCACTGGGAGATAGGAGAGAAGTAGTGAGAAAAGGTATTCTAAGTATA
GGTAATCACACTGTGAAAGCTGCAGTGTCTTCAAATACATTTGTAGTACT
GAACAAATTAGGTACACTTTTAATGTGGATGATGAACAAACACTCAAGGT
GAAAGTAGGGCAATAAAGAAAAGATGGAATGTTTATGTTGAGGCAGCACT
GAAAGTCAAGCTAAGATGTATGTTCCTCATTCTGTGTGAAAGGAGAAAAC
TATAAAATAGCTCTAAGGATTAGAGAATATATGATCAACGTTTGAATAAT
AGTTAATCTGGCCACATGGCAAATAAATTGCGGAGAGTTCTATTGCCCAT
TTATCAGTATTATACATGCCCAATTATTGAGTGCTTCATATGTGAGGTTT
ATCATTGAAACAACGGGCCCCCTCCCTCTTTATCTCCTCCCCATAAAAAG
GTCAAATTTTTTCTTGAGGGAAATACACCCCGCCGCACGGACATTATTTT
ACTTTTGCAATCAACGAACTTATGGTACCTCCCCCCATTACTATTCACAC
GCTTGGAACAAATGTCTACCTCCTTTTATTTCCGGGTGTATCGATGGTTT
TCTCTTCTACCGCCACTTTCGTATTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_i19.b1 MSMg01no045_i19.b1 CHROMAT_FILE:
MSMg01no045_i19.b1 PHD_FILE: MSMg01no045_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:32 2005
         (242 letters)



>mm_chrX_55696152_55696793
          Length = 642

 Score =  468 bits (242), Expect = e-136
 Identities = 242/242 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagtggtagttagaaacgaaaagccccgaaaatagctaagtatttgtcagatacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagtggtagttagaaacgaaaagccccgaaaatagctaagtatttgtcagatacagag 260

                                                                       
Query: 61  gacttagttaaaagttgaacattttcattaaagtgatgggattttcccagaatgccttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttagttaaaagttgaacattttcattaaagtgatgggattttcccagaatgccttga 320

                                                                       
Query: 121 ggctcaagagtggcaggggaaacttaagtggacatgtgtttatctctgagatggcaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctcaagagtggcaggggaaacttaagtggacatgtgtttatctctgagatggcaagat 380

                                                                       
Query: 181 gccttcacttgagaataacacttgcagtctctaaggaaaatcatgaaggcagatttgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttcacttgagaataacacttgcagtctctaaggaaaatcatgaaggcagatttgctt 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)