Query= MSMg01no045_n23.b1 MSMg01no045_n23.b1 CHROMAT_FILE:
MSMg01no045_n23.b1 PHD_FILE: MSMg01no045_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:56 2005
(586 letters)
>mm_chrX_96244322_96245307
Length = 986
Score = 969 bits (501), Expect = 0.0
Identities = 553/584 (94%), Gaps = 21/584 (3%)
Strand = Plus / Minus
Query: 3 ggaattcngtaccccgtacctctttcagtaatccctaaaacccaggacttcttgcaatga 62
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ggaattcagtaccccgtagttctttcagtaatccctaaaacccaggacttcttgcaatgc 751
Query: 63 taggcaagtatattatcaaaggtgcttcatccttagcctctctgttttttgcccattgag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 taggcaagtatattatcaaaggtgcttcatccttagcctctctgttttttgcccattgag 691
Query: 123 aaggtcatgctggagtacaggctatgtgagccagttgtttagagccaagcccttcctaca 182
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aaggtcgtgctggggtacaggctatgtgagccagttgtttagagccaagcccttcctaca 631
Query: 183 taaagtctctgaccctgcccggcctgatttgacctcagcctggagcaaaatggtgggata 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaaagtctctgaccctgcccggcctgatttgacctcagcctggagcaaaatggtgggata 571
Query: 243 caagtccatacctcagacaagccagtctttggccagcctagataaaggacaggaaatccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caagtccatacctcagacaagccagtctttggccagcctagataaaggacaggaaatccc 511
Query: 303 aggccagctcccctggaggttgctccatctactgcaggaacagagctgccgctcaggcag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aggccagctcccctggaggttgctccatctactgcaggaacagagctgccgctcaggcag 451
Query: 363 agcttcctctgcggtgaggaagctgcctcgtcagccccaactgccctggctgctgggtgt 422
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 agcttcctctgtggtgaggaagctgcctcgtcagccccagctgccctggctgctgggtgt 391
Query: 423 ggtttgtggaaaacaggcagagctgagtgtcaggagacctgggtcccaaatcttgcctcg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggtttgtggaaaacaggcagagctgagtgtcaggagacctgggtcccaaatcttgcctcg 331
Query: 483 ttgcaaaccgttccattcctctcctgagcctcagctggagactgccgaggatcacagcag 542
|||||||||||||| ||||||||||||| |||||||||||
Sbjct: 330 ttgcaaaccgttcccttcctctcctgag---------------------gatcacagcag 292
Query: 543 agggatggggctgggggagctacttggtcagactactctgagag 586
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agggatggggctgggggagctacttggtcagactactctgagag 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_n23.g1 MSMg01no045_n23.g1 CHROMAT_FILE:
MSMg01no045_n23.g1 PHD_FILE: MSMg01no045_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:56 2005
(597 letters)
>mm_chrX_96107508_96108504
Length = 997
Score = 1083 bits (560), Expect = 0.0
Identities = 589/600 (98%), Gaps = 5/600 (0%)
Strand = Plus / Plus
Query: 1 aatactttctattgaccaaaaacccttagcaagctgagtgaggtcgtaagtacctgttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactttctattgaccaaaaacccttagcaagctgagtgaggtcgtaagtacctgttct 260
Query: 61 cttctgaggctgagccaggaggagccctcaaggctagaaatgtaaaccagacaacaacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctgaggctgagccaggaggagccctcaaggctagaaatgtaaaccagacaacaacta 320
Query: 121 ataaataattaaatttactaaataaaaaataaaatacaaagagttggaacaaagtagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaataattaaatttactaaataaaaaataaaatacaaagagttggaacaaagtagttt 380
Query: 181 atgaataaaaccatggatacaggagcttaagattacaatcaacatactgttattaatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaataaaaccatggatacaggagcttaagattacaatcaacatactgttattaatcaa 440
Query: 241 gaggaaaaggtacaatctttttgcttgcttttttgaaacattacccactctttagcccag 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggaaaaggtacaatttttttgcttgcttttttgaaacattacccactctttagcccag 500
Query: 301 gctgacctcagagttatggaaatccttctgtgccagtgtcccaactgctggagttgcaag 360
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 501 gctgacctcagagttatggaaatccttctgtgccagtgtcctaagtgctggagttgcaag 560
Query: 361 ttcatgtcatgaagtccagccaaaaagtggcttttttttttttt---agaacaacaacaa 417
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 561 ttcatgtcatgaagtccagccaaaaagtggcttttttttttttttttagaaaaacaacaa 620
Query: 418 caacaacaacaaaaaaaaaaaaacaaaaacagaaaatgaagagcattggctcactttgaa 477
|||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 621 caacaaaaa-aaaaaaaaaaaaa-aaaaacagaaaattaagagcattggctcactttgaa 678
Query: 478 aacaaaattagaattagagctaagcttgtggtacaaacctataatcctagcactttggag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aacaaaattagaattagagctaagcttgtggtacaaacctataatcctagcactttggag 738
Query: 538 gctaaggcaggagtattacaaattcaagtcctactaggctattttgttagactctgtctc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctaaggcaggagtattacaaattcaagtcctactaggctattttgttagactctgtctc 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
