BAC Information

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BAC

Clone NameMSMg01-045P08
ChromosomeX (Build37)
Map Location 104,392,415 - 104,392,754
singlet/doubletsinglet
Overlap genenone
Upstream genePgk1, Taf9b, 5031408O05Rik, EG333563, LOC622494, Gm784, Cysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik
Downstream geneGpr174, LOC668502, LOC622613, LOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045P08.T7 (MSMg01no045_p08.b1)MSMg01-045P08.TJ (MSMg01no045_p08.g1)
ACCAG276456AG276457
length764760
length of high quality
(start - end)
355 (102 - 456)343 (125 - 467)
definitionCHROMAT_FILE: MSMg01no045_p08.b1 PHD_FILE: MSMg01no045_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:02 2005CHROMAT_FILE: MSMg01no045_p08.g1 PHD_FILE: MSMg01no045_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGTGGGTGGTTGTGTTGTTTTTTGTTGTTTTTTNTNTTTTTTATCTTT
NCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATCCGCG
GAATTCTTTGTTTATCTCCTACCCCATTTTTAATAGGGTTATTTAGTTTT
CTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCACT
CTCAGATCTAGGAATGGTAAAAATCTTTTCCCAATATGTTGGTTGCTTTT
TTGTCTTCTTGACAATGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATG
AGGCCCCATATGTTAATTCTCAATCTTACAGCACAAGCCATTGCTGTTGT
GTTCTGGAATTTTCTCCCTGTGTTCTTATCTTTGAGGCTTTTCCCCACTT
TTTCCTCTATAATTTTCAGTGTCTCTGGTTTTATGTGGTGTTCCTTGATC
CACTTAGACTTGACGCCCGCACAAGGAGATTAGAATGGATCAATTCGAAT
TCTTCTACATTATAACCTCCAGTTGTGCCAGTAACATTTGTTGAAAAAGC
TGACTTTTTTCCATTGGATGGTTTTAGCTCCTTTGCCAAGATCTGGTGAC
CATTAGGTGTGTCAGTTCATTTCTGGGTCTTTTATTGTTTTTCCTTTGAT
CTATCCTGTTTGTCCCTGTACCAGTACCCTGCCTGGTTTTATCACATTTG
CCCCTGTATTATAGCATTGATGTCTTGAATGGAGAATCCCTCCAGAGGTT
CTTTGATTGTTGTT
TCTTTTTTTTTGTGTTTTTTCTCTGTTTTCCTTNCTCCCNAATAACCCNN
NNCCGAAGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGCAAAGAACTACAGTTCAGTCT
CTTGCATACACATGGAACTTCACAACTACCTGTAATTCCAGGTTCAGGGA
TCCATTGTTGTCATTGGTCTGTGGGCATCAGACAAATATATGGCACATGC
ACATACATGCATGTAAAATACATATACAAAAAGCAAGAATAAATTTAAAA
ACATATGCATGCATGGGTTGTAAATATAATAGTTTTAGAAATTATTATAT
GAAACTATACAGTAGTATAATGTATTATTACTTGCTGTGATTTAAATATG
AATTATAAAAAGTTCAAGGTCATAAACTTTTAAGTTTAGGCACCAGTGTG
GCAATGCTTTGATGCACACAAATCTTTAATAGATAATGCCCAAGAGATGT
AATTATCTCATGTGGGCATGCCCATAAAATGATTAATGCTATCTGTCATA
AATTTTAGCTTTTGTGGGAATATATATAAATATATAAATATATATATATA
CATATATAAATATATATATGCAGTATATATGCAGGTTGTTATGAAATAAA
ACTATCCCCCATGACTGAATACCTGTTATATTTCCCAACTTACTTTCCTT
TGTTGGTTAAAAAAACCGTAATGCAACCAAATGTTTACCCTAAAAAAGTA
TGTTCATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_p08.g1 MSMg01no045_p08.g1 CHROMAT_FILE:
MSMg01no045_p08.g1 PHD_FILE: MSMg01no045_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:02 2005
         (343 letters)



>mm_chrX_104392215_104392957
          Length = 743

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgcaaagaactacagttcagtctcttgcatacacatggaacttcacaactacctgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgcaaagaactacagttcagtctcttgcatacacatggaacttcacaactacctgta 260

                                                                       
Query: 61  attccaggttcagggatccattgttgtcattggtctgtgggcatcagacaaatatatggc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actccaggttcagggatccattgttgtcattggtctgtgggcatcagacaaatatatggc 320

                                                                       
Query: 121 acatgcacatacatgcatgtaaaatacatatacaaaaagcaagaataaatttaaaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgcacatacatgcatgtaaaatacatatacaaaaagcaagaataaatttaaaaacat 380

                                                                       
Query: 181 atgcatgcatgggttgtaaatataatagttttagaaattattatatgaaactatacagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatgcatgggttgtaaatataatagttttagaaattattatatgaaactatacagta 440

                                                                       
Query: 241 gtataatgtattattacttgctgtgatttaaatatgaattataaaaagttcaaggtcata 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtataatgtattattccttgctgtgatttaaatatgaattataaaaagttcaaggtcata 500

                                                   
Query: 301 aacttttaagtttaggcaccagtgtggcaatgctttgatg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttttaagtttaggcaccagtgtggcaatgctttgatg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)