CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATTCAACATCACTTCTTTCAATAATAAGAGGAAATGACACCCACTAA
GAAAACACTGGTTACATAATTTCTAGCATATACACATACTGCCATACTAT
AGGGTTATCATTTTAAAGAGGTTCTGCTACACAAAGATATTATTGATAAA
CTGTTATACACTGCATAAAAACAAGTTGCAGAATTTCCATTGGTTTTTTT
TAAAAAGTGATCATATTTATCTTTATAGAAAGATATGTGCACACTTGAAG
AGTCATACAAAATGTCTCAGAACACAGAGAAGTAATTCATGGTGCCTCTG
GAGAGACACTGAGAAGACAGGGTTGATGAAGGACTTTTTTTTTTAGTTTA
TACATCCATTCATTCATTCATCAAATAGCCGTTTAAGTTGTTCTATGGAG
TATCTTTTAGGTCCAAAGGATACAGGTAAGGCTTCAGCTGCTATATTTTG
AAGGGGAACTAGACAATAAGAAAATTATACAAATGAGCAAGAAGACTTCA
GAGAGTGAAGTTGTGAAGTTGACCAAAGGCCTCTCTGAGGAGGTGACAAG
TCGGGACTTAAATGACATGAAGGGGCCAACCACCAGAAAATCAAGAGGAA
AAGCAGTCCAACTAGAAACTGAACGGGAGAGCA

CATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGCTAAGTGGTTCTAATCACCAGAGAGCA
GAGAGAGTGTGGGGTGGGGATAAGGAAGAGAGAGAGAGAGAGAGACACCA
TCTCTTTTTTTTTTTTTCTTCTTCCCCCTTTCTTTCCTCCTTTTTCTCCT
TCTTCCTCTCCCCTTCTTCCCTTTCCCCCCTTTTTTTCCCTCTCCCCCCT
CTCTCTTCCTTTCTCCCCCCTCCTTTCCCTTCTTTTCCCCCTCTCTCCTC
TTTTCCCCCCCCTCTCCTCCCCCCCCTCCCCTCTCTTTTTTCCTCCCCCC
CTCTTCCCCCCCCTTCCCTCCCCCTTTCTTCTCTTCTCCTCCCTCCTTTC
TCCTTTCCTTTTTTCCCTCTTCTCCCCCCCCCTCTTTCCTCTTTTCTCCC
TCCCCCCCCCCTTTTTCCTCTTCCCCCTCTCCCTTTTCGTTCCTCCTTCC
CTTCCTTTCTTCTCTCCTCTCTTTTCCTTCCCCCCCATCTCCTCCCTCTC
TCCCTCTTCTTATTCCCTTTTCCCTTCTCCCCCCCTTCCTCCTCTTTTTT
TTCTTTTTTTCTCTTCTCCCCCCCTTTTTCTTTTCTCCTTTCCTTTTTCC
CCTCTCTTTCCTTTTCTCTCTCCCCCTCTTCCTCCCTTTTCCCCTTTTCT
TCTTCCCCTTTCTTTCTCCTCCTTTTTTCCCTTTTTTTCCCCCCCCCCTT
CCCCCCTTCTCTTTTTTCTCTTTTCTTTTTTTTTCTCCCTTTTTCTCCCC
CTCTTTTCCCCCCT

Query= MSMg01no046_b05.b1 MSMg01no046_b05.b1 CHROMAT_FILE:
MSMg01no046_b05.b1 PHD_FILE: MSMg01no046_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:10 2005
         (641 letters)



>mm_chrX_147387998_147389037
          Length = 1040

 Score = 1207 bits (624), Expect = 0.0
 Identities = 633/636 (99%), Gaps = 1/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattcaacatcacttctttcaataataagaggaaatgacacccactaagaaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattcaacatcacttctttcaataataagaggaaatgacacccactaagaaaac 264

                                                                       
Query: 65  actggttacataatttctagcatatacacatactgccatactatagggttatcattttaa 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actggttacataatttctagtatatacacatactgccatactatagggttatcattttaa 324

                                                                       
Query: 125 agaggttctgctacacaaagatattattgataaactgttatacactgcataaaaacaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaggttctgctacacaaagatattattgataaactgttatacactgcataaaaacaagt 384

                                                                       
Query: 185 tgcagaatttccattggttttttttaaaaagtgatcatatttatctttatagaaagatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcagaatttccattggttttttttaaaaagtgatcatatttatctttatagaaagatat 444

                                                                       
Query: 245 gtgcacacttgaagagtcatacaaaatgtctcagaacacagagaagtaattcatggtgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgcacacttgaagagtcatacaaaatgtctcagaacacagagaagtaattcatggtgcc 504

                                                                       
Query: 305 tctggagagacactgagaagacagggttgatgaaggacttttttttttagtttatacatc 364
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 tctggagagacactgagaggacagggttgatgaaggacttttttttt-agtttatacatc 563

                                                                       
Query: 365 cattcattcattcatcaaatagccgtttaagttgttctatggagtatcttttaggtccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cattcattcattcatcaaatagccgtttaagttgttctatggagtatcttttaggtccaa 623

                                                                       
Query: 425 aggatacaggtaaggcttcagctgctatattttgaaggggaactagacaataagaaaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggatacaggtaaggcttcagctgctatattttgaaggggaactagacaataagaaaatt 683

                                                                       
Query: 485 atacaaatgagcaagaagacttcagagagtgaagttgtgaagttgaccaaaggcctctct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atacaaatgagcaagaagacttcagagagtgaagttgtgaagttgaccaaaggcctctct 743

                                                                       
Query: 545 gaggaggtgacaagtcgggacttaaatgacatgaaggggccaaccaccagaaaatcaaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaggaggtgacaagtcgggacttaaatgacatgaaggggccaaccaccagaaaatcaaga 803

                                               
Query: 605 ggaaaagcagtccaactagaaactgaacgggagagc 640
           ||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggaaaagcagtccaactagaaactgaacgggagagc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space:   649930
Effective search space used:   649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)