BAC Information

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BAC

Clone NameMSMg01-046B09
ChromosomeX (Build37)
Map Location 108,627,074 - 108,781,711
singlet/doubletdoublet
Overlap geneRps6ka6, EG664791, D030011N01Rik
Upstream geneLOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046B09.T7 (MSMg01no046_b09.b1)MSMg01-046B09.TJ (MSMg01no046_b09.g1)
ACCAG276550AG276551
length685685
length of high quality
(start - end)		641 (45 - 685)612 (74 - 685)
definitionCHROMAT_FILE: MSMg01no046_b09.b1 PHD_FILE: MSMg01no046_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:11 2005CHROMAT_FILE: MSMg01no046_b09.g1 PHD_FILE: MSMg01no046_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,781,091 - 108,781,711)(108,627,074 - 108,627,684)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAGAACTCAAATACGAACGTTACTGCTAATATTAGGTGAATTGT
TTTTCTTCTAAGATTATAATGCTCCCACAAAATTTACCCCAAGTATTTTA
TTTCAATCATCTGTGAAACATTTTTACTGTCTGTACTGATAGTTTTAATT
TTAAATCACCAGCTCGAAGTAGCAAGGCATAGTTATATACACCTGTGACA
TTAACATATGGAAGATGGAAACAGTTTATTTAGAAATTTGTGCTCATCCT
GTGCCTTATAATAAACTCATGAACAGTCTGGTTATATGATACTCTGTCTT
AAAAGAAATATAAATCATACATCTAAGCTAATAAACAATAATAGTACTCT
AGTATGTAATTTAAAAGTATCTCAGATGCATAAGTGCAATTAATATATTG
ATTCTTTTAATAATTGGGCTAGAAATATAGTTCAGCTGATAGACTACTTG
CCTAGCATGTAATGAGCCCTGGGTTCTCTCTTCATCACCACATAAGTTGG
GTGATGTGGTAAACCCCTGTAAAAAGATAAAGCCGGGGGGATCATAATTT
CAATACTGTCCTTGGCTAACTAGGCTAGCATGTGCTAGACACCTTTTATA
AAGGAAATTTACAAGTTTGTGAACCAACAGATAAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTTCAGGATGGTTAGGGTAATAAAA
GTACTTGGAGGGCTAGGGACTTGTGATTTAACTTTGCTAACTCCAGATAA
CAAACTGGCAAGACAGAGACCATTTAAAAAGATAGCATGGGTTAAGAGGA
ACAAGTCAGGCCAAACTAACCCCAATTCCTTTTTGGAAGTGTAAATAATC
TTAGAAAATCATATTAAGGCCTTATACCTATAATTGAACAAAATACAATG
CCCCTTTTGTTAAGAGAGATAAAATGTGGCTTGAAGAAATAGGATTTATA
GTTAGGGGACAAACCATTCTCACCTAATTGTTAATAATGGTGAACATTTA
TAAGGTCCTCTCTTTAAAAAAAAATCACATTATGGTCAATGTCACAACTG
AAAACATAAAAGTAGTCCTTTTGAAATTGTCAGATGACAAAACTGGAAAG
GAAAGCAATCTGGTTTGATACTGGTTTAAAAGGAGAGGCAAATCTAACCA
TATTTAAAAGATTAAGAAACAAAGACAAATTATACTAATTTAATTTCAAA
AAATTAACTACACAAGGGGAATTGTCTTGACAACAATATACAACTACATC
TATAAGACATCATTAAAAATATTCTTGCTGATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_b09.b1 MSMg01no046_b09.b1 CHROMAT_FILE:
MSMg01no046_b09.b1 PHD_FILE: MSMg01no046_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:11 2005
         (641 letters)



>mm_chrX_108781091_108782131
          Length = 1041

 Score = 1185 bits (613), Expect = 0.0
 Identities = 619/621 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcagaactcaaatacgaacgttactgctaatattaggtgaattgtttttcttc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattcttcagaactgaaatacgaacgttactgctaatattaggtgaattgtttttcttc 562

                                                                       
Query: 65  taagattataatgctcccacaaaatttaccccaagtattttatttcaatcatctgtgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagattataatgctcccacaaaatttaccccaagtattttatttcaatcatctgtgaaa 502

                                                                       
Query: 125 catttttactgtctgtactgatagttttaattttaaatcaccagctcgaagtagcaaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catttttactgtctgtactgatagttttaattttaaatcaccagctcgaagtagcaaggc 442

                                                                       
Query: 185 atagttatatacacctgtgacattaacatatggaagatggaaacagtttatttagaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagttatatacacctgtgacattaacatatggaagatggaaacagtttatttagaaatt 382

                                                                       
Query: 245 tgtgctcatcctgtgccttataataaactcatgaacagtctggttatatgatactctgtc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tgtgctcatcctgtgccttataataaactcatgaacagtctggttatatgatactctgac 322

                                                                       
Query: 305 ttaaaagaaatataaatcatacatctaagctaataaacaataatagtactctagtatgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaagaaatataaatcatacatctaagctaataaacaataatagtactctagtatgta 262

                                                                       
Query: 365 atttaaaagtatctcagatgcataagtgcaattaatatattgattcttttaataattggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaaaagtatctcagatgcataagtgcaattaatatattgattcttttaataattggg 202

                                                                       
Query: 425 ctagaaatatagttcagctgatagactacttgcctagcatgtaatgagccctgggttctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaaatatagttcagctgatagactacttgcctagcatgtaatgagccctgggttctc 142

                                                                       
Query: 485 tcttcatcaccacataagttgggtgatgtggtaaacccctgtaaaaagataaagccgggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tcttcatcaccacataagttgggtgatgtggtaaacccctgtaaaaagataaagccgggg 82

                                                                       
Query: 545 ggatcataatttcaatactgtccttggctaactaggctagcatgtgctagacacctttta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  ggatcataatttcaatactgtccttggctaactaggctagcatgtgctagacacctttta 22

                                
Query: 605 taaaggaaatttacaagtttg 625
           |||||||||||||||||||||
Sbjct: 21  taaaggaaatttacaagtttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_b09.g1 MSMg01no046_b09.g1 CHROMAT_FILE:
MSMg01no046_b09.g1 PHD_FILE: MSMg01no046_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:11 2005
         (612 letters)



>mm_chrX_108626874_108627885
          Length = 1012

 Score = 1166 bits (603), Expect = 0.0
 Identities = 609/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttcaggatggttagggtaataaaagtacttggagggctagggacttgtgatttaact 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tgtttcaggatggttagggtaataaaagtactcggagggctagggacttgtgatttaact 260

                                                                       
Query: 61  ttgctaactccagataacaaactggcaagacagagaccatttaaaaagatagcatgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctaactccagataacaaactggcaagacagagaccatttaaaaagatagcatgggtt 320

                                                                       
Query: 121 aagaggaacaagtcaggccaaactaaccccaattcctttttggaagtgtaaataatctta 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaggcacaagtcaggccaaactaaccccaattcctttttggaagtgtaaataatctta 380

                                                                       
Query: 181 gaaaatcatattaaggccttatacctataattgaacaaaatacaatgccccttttgttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaatcatattaaggccttatacctataattgaacaaaatacaatgccccttttgttaa 440

                                                                       
Query: 241 gagagataaaatgtggcttgaagaaataggatttatagttaggggacaaaccattctcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagataaaatgtggcttgaagaaataggatttatagttaggggacaaaccattctcac 500

                                                                       
Query: 301 ctaattgttaataatggtgaacatttataaggtcctctctttaaaaaaaaatcacattat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaattgttaataatggtgaacatttataaggtcctctctttaaaaaaaaatcacattat 560

                                                                       
Query: 361 ggtcaatgtcacaactgaaaacataaaagtagtccttttgaaattgtcagatgacaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcaatgtcacaactgaaaacataaaagtagtccttttgaaattgtcagatgacaaaac 620

                                                                       
Query: 421 tggaaaggaaagcaatctggtttgatactggtttaaaaggagaggcaaatctaaccatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaaaggaaagcaatctggtttgatactggtttaaaaggagaggcaaatctaaccatat 680

                                                                       
Query: 481 ttaaaagattaagaaacaaagacaaattatactaatttaatttcaaaaaattaactacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaaagattaagaaacaaagacaaattatactaatttaatttcaaaaaattaactacac 740

                                                                       
Query: 541 aaggggaattgtcttgacaacaatatacaactacatctataagacatcattaaaaatatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggggaattgtcttgacaacaatatacaactacatctataagacatcattaaaaatatt 800

                      
Query: 601 cttgctgatca 611
           |||||||||||
Sbjct: 801 cttgctgatca 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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