Query= MSMg01no051_o09.b1 MSMg01no051_o09.b1 CHROMAT_FILE:
MSMg01no051_o09.b1 PHD_FILE: MSMg01no051_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:15 2005
(283 letters)
>mm_chrX_108862337_108863018
Length = 682
Score = 485 bits (251), Expect = e-142
Identities = 275/283 (97%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 1 ctttcttaacatctcactgaactcaggttattattgtgaatcctgactcataaagaccta 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcttaacatctcactgaacttaggttattattgtgaatcctgactcataaagaccta 260
Query: 61 ccttgcagagcactgtttttttttttttttacttgtgagctcactaagattctttctatt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ccttgcagagcactgtttttttttttttt-acttgtgagctcactaagattctttctatt 319
Query: 121 aactgccaatgtttcccctgatttcacctacctcttttacatttacagccagatttttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aactgccaatgtttcccctgatttcacctacctcttttacatttacagccagatttttaa 379
Query: 181 atccattatctattataggatgtaattaggatttctgattcacacacccataaagattct 240
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 380 atcaattatctattataggatgtaattaggatttctgattcacacagcaataaagattct 439
Query: 241 ttggcagtatacattcaataactatttcctgtatggaaccatg 283
||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct: 440 ttggcagtagacattcaataactatttactgtatggaagcatg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space: 184402
Effective search space used: 184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no051_o09.g1 MSMg01no051_o09.g1 CHROMAT_FILE:
MSMg01no051_o09.g1 PHD_FILE: MSMg01no051_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:15 2005
(276 letters)
>mm_chrX_108980081_108980754
Length = 674
Score = 468 bits (242), Expect = e-136
Identities = 267/276 (96%), Gaps = 2/276 (0%)
Strand = Plus / Minus
Query: 1 taggcaggcacaagattttgtctcttttaaaatgagaaacttcttatcatctgctggtaa 60
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 474 taggcaggcagaagattttgtctcttttaaaaggagaaacttcttatcatctgctggtaa 415
Query: 61 ctcatcaacatgaatgatattctatagtcttgctattttctttgcctgcatgctatattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctcatcaacatgaatgatattctatagtcttgctattttctttgcctgcatgctatattt 355
Query: 121 ttaaatatttttcttcagtcaaaaattttcttcagtcctcagtaataccaacagatctaa 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 354 ttaaatatttttcttcagtcaaaaattttcttcagtcctcagtaatagcaacagatttaa 295
Query: 181 ataggtaggactttaactttttttttttttaaatatacctttggtgtctactgctaggtt 240
|||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 294 ataggtaggactttaactttcttttttt--aaatatacctttggtatctactgctaggtt 237
Query: 241 taaaaagaggagaaggaattcaagctctctactagt 276
|||||||||||||||||||||||||| |||||||||
Sbjct: 236 taaaaagaggagaaggaattcaagctttctactagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 674
Length adjustment: 9
Effective length of query: 267
Effective length of database: 665
Effective search space: 177555
Effective search space used: 177555
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
