BAC Information

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BAC

Clone NameMSMg01-052F20
ChromosomeX (Build37)
Map Location 162,604,569 - 162,738,546
singlet/doubletdoublet
Overlap geneGemin8, Gpm6b
Upstream geneGlra2, LOC100040753
Downstream geneOfd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052F20.T7 (MSMg01no052_f20.b1)MSMg01-052F20.TJ (MSMg01no052_f20.g1)
ACCAG280871AG280872
length709711
length of high quality
(start - end)		541 (68 - 608)212 (68 - 279)
definitionCHROMAT_FILE: MSMg01no052_f20.b1 PHD_FILE: MSMg01no052_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:58 2005CHROMAT_FILE: MSMg01no052_f20.g1 PHD_FILE: MSMg01no052_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,738,006 - 162,738,546)(162,604,569 - 162,604,780)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
GAGAGATGACAGGAATGGGATGAGAAGTGGTAAGACTTTGATGTGACCTT
GAGGAGAAGTCCAGGATAAAGCCAAGACCAGGTAAGGGAAGCAAGTACTC
TCAGCTTATACAACTCAACGTACACAGTCCTTTAGGACTTTCTTCCACAC
TGACTTGGCCCCAGCCATGGTAAAGGTACCGAATCTTTGACAAATATGCA
TGGTGAAGTCATAATGGAGACAGATGTGAAGACAAACCATCAGAAACTGG
AGAATCACTATCCCATATGACATTTGCAGAATGAGGGTCTGAAGGAAAAC
AGGGAGAAATGGGTTTGCCTGCCTTCCCTAGGGAAACAGAATAAGAAATT
TTGTGTTAGCAACTACAAGATATGCTACCTGCTTTTTATTGAAGTAAAGT
ACTTTTCTGAGATATAAGGGAGAGCTTAGTTTTGAGTGTGATGATTTTCA
ATTTTAAAAAATGTTGTGTGTATGGGTGTTTTGCCTATATGCAGACCTAT
GGAGCATAAGCATGCCTGGTGCCGTTGAAGGCCAGAAGAGGGCATCTGAT
GCCCTGGCACTAGAGTTACATTACTGCTGTGACCTACCATGTGGAAGGTG
GGTCCTTTTAGAAGAGCAGCTAGTGAGCGCTCTTAAACACAGAACCATCT
CTCTAGGGC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAAGAGCCCATGAGATTAGCTATGGATCCCTAT
GGTCCACTAGATCATCCATGCTGGTACATCCCATGGAGTGGGGGGTGGGG
GAGTGGGCATAGCCTAGGGATTTTCCGTTCTACTTCTTCTGTAGCATAAC
AGCCTTAGCCTGTAGGACTTAAGACTACATTCTCTCACCTTGCCTTCAGG
TCCATAGAACTCTCCTCCAACTGCTGGGATGAGCAGGGGTGAGTGAGATC
TGAAAACTATGAATATTTTGGCATATCTGCTATAGCAGGACAGTTATAAG
TGGATTCTCTCATTTCTCCGCCGCACTGACTAACATATAAGCTATTTCCA
GGATACTGCAAGCCAATGGTTCCCGGCCATCCTAGTGCTGTAACCTTTCA
TACTGTGCCTCCCCCCACCCATAAAATTATTTCCGTTGCTACTTAATAAC
TGTACCTTTGCTAGTGTTATTAACTACAATGTTAATATTTTTGGACATAA
AAGTTTCGCTGACGGTCTCATGATCCTAAATTTCATACCCTCCTGCTCTA
ACACCTCCTAACTATTCCGGCCTGCGTTTAATACGTAAATCCTCCGTACT
GTCTAATGCGATTGGTCCACTACTTGCCCAAACTCTTGACCACAACTTCT
CTCTTGTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_f20.b1 MSMg01no052_f20.b1 CHROMAT_FILE:
MSMg01no052_f20.b1 PHD_FILE: MSMg01no052_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:58 2005
         (541 letters)



>mm_chrX_162737904_162738844
          Length = 941

 Score = 1031 bits (533), Expect = 0.0
 Identities = 539/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatgagaagtggtaagactttgatgtgaccttgaggagaagtccaggataaagccaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggatgagaagtggtaagactttgatgtgaccttgaggagaagtccaggataaagccaaga 584

                                                                       
Query: 61  ccaggtaagggaagcaagtactctcagcttatacaactcaacgtacacagtcctttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ccaggtaagggaagcaagtactctcagcttatacaactcaacgtacacagtcctttagga 524

                                                                       
Query: 121 ctttcttccacactgacttggccccagccatggtaaaggtaccgaatctttgacaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctttcttccacactgacttggccccagccatggtaaaggtaccgaatctttgacaaatat 464

                                                                       
Query: 181 gcatggtgaagtcataatggagacagatgtgaagacaaaccatcagaaactggagaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcatggtgaagtcataatggagacagatgtgaagacaaaccatcagaaactggagaatca 404

                                                                       
Query: 241 ctatcccatatgacatttgcagaatgagggtctgaaggaaaacagggagaaatgggtttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctatcccatatgacatttgcagaatgagggtctgaaggaaaacagggagaaatgggtttg 344

                                                                       
Query: 301 cctgccttccctagggaaacagaataagaaattttgtgttagcaactacaagatatgcta 360
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cctggtttccctagggaaacagaataagaaattttgtgttagcaactacaagatatgcta 284

                                                                       
Query: 361 cctgctttttattgaagtaaagtacttttctgagatataagggagagcttagttttgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cctgctttttattgaagtaaagtacttttctgagatataagggagagcttagttttgagt 224

                                                                       
Query: 421 gtgatgattttcaattttaaaaaatgttgtgtgtatgggtgttttgcctatatgcagacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gtgatgattttcaattttaaaaaatgttgtgtgtatgggtgttttgcctatatgcagacc 164

                                                                       
Query: 481 tatggagcataagcatgcctggtgccgttgaaggccagaagagggcatctgatgccctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tatggagcataagcatgcctggtgccgttgaaggccagaagagggcatctgatgccctgg 104

            
Query: 541 c 541
           |
Sbjct: 103 c 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no052_f20.g1 MSMg01no052_f20.g1 CHROMAT_FILE:
MSMg01no052_f20.g1 PHD_FILE: MSMg01no052_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:58 2005
         (212 letters)



>mm_chrX_162604369_162604980
          Length = 612

 Score =  387 bits (200), Expect = e-112
 Identities = 209/212 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagagcccatgagattagctatggatccctatggtccactagatcatccatgctggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagagcccatgagattagctatggatccctatggtccactagatcatccatgctggtac 260

                                                                       
Query: 61  atcccatggagtggggggtgggggagtgggcatagcctagggattttccgttctacttct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atcccatggagtggggggtgggggagtgggcatagcctagggtttttccgttctacttct 320

                                                                       
Query: 121 tctgtagcataacagccttagcctgtaggacttaagactacattctctcaccttgccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tctgtagcataacagccttagcctgtaggacttaagactacattctctcaccttgtcttc 380

                                           
Query: 181 aggtccatagaactctcctccaactgctggga 212
           || |||||||||||||||||||||||||||||
Sbjct: 381 agttccatagaactctcctccaactgctggga 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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