BAC Information

Click to search

BAC

Clone NameMSMg01-052P06
ChromosomeX (Build37)
Map Location 19,394,752 - 19,537,097
singlet/doubletdoublet
Overlap geneLOC668995, LOC385336
Upstream geneEG628855, LOC385333, EG628871, LOC100043953, BC049702, LOC675558
Downstream geneChst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052P06.T7 (MSMg01no052_p06.b1)MSMg01-052P06.TJ (MSMg01no052_p06.g1)
ACCAG281305AG281306
length688687
length of high quality
(start - end)
508 (63 - 570)300 (66 - 365)
definitionCHROMAT_FILE: MSMg01no052_p06.b1 PHD_FILE: MSMg01no052_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:43 2005CHROMAT_FILE: MSMg01no052_p06.g1 PHD_FILE: MSMg01no052_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,536,590 - 19,537,097)(19,394,752 - 19,395,051)
sequence
TATATTTGCGGCGCTAAACGACTCCTATTTCGAGAGAATCCGCGGAATTC
ATTAATTTCCGCATATATTGTAATACAAAAAGAGGTTTTTTTCCAGACAG
TGAACTGAGGCAAGTACCGACCATCTAGGCTAGCCAGCTCAGTATGTTCA
ACAACTGAGGAGCATTCTCATGACAATTCTTAAAAAGCTAACTAGCTTTG
ACAGCAGAAAGTCATAGCCAGATGAATCAATCCATGTAAGTATATATGAT
TGAACTGTTCCCGAAAAGGCTTCTGGGTCATATACAAACCATTGTCTGAG
GTCATATTGAAAGCTGCTTCATGTGCTGCCTGCTAAGCTGAAAGGAAGAT
AGAAATATCCTTTGCTTGATTCTACAACAGTTGGGGGCTATCACATAAAG
AAATGGAATTTTTCCCTTTCTATTGTCACAGGAGATTTTCTTAGAAGGAG
AAAGACATGCAAGTAGACTTTGGCTTTGTTGAGTATGAGCTGGTATCATT
TAACGCATTCAAATCTTATTGGGGTTTCTCATATTTACAGCCCATTTACT
GGTTTTGAGAATTATTTTTAAAAGTGAATGATGGATTCAAATTCCATGCC
TCTGTGTGTTGGCGATGCTGCGCTGCAAGAGGATGCATAAAGGAAAACAA
TGACTCTAATTGCAAGCGCTTTGGCCTGTCCCCACCAA
ATGAAGAGTGAGGCCTGGCGGACCCTGGTTGCAGAATTTGGGTGAACTAT
AGAAGTATCCGCGAAATTCTAGGGACTGTGATATGAACACCTTATGAGAA
TCTATTATTATTATATTTCTATAACATACATGAAGAAAAATCATGAAGTA
AGTAATTCAGCAATAAAATTGGACACAATATTTAACCTTGTATAATTGAT
AGAATAATAGAGAAAAATCAGTAAAGATGTAGAAGACTTGCTGATAAATG
TAATTATATATTTATATATTGTTTACATATACTCGGAATTATCAATTTGA
CTTCATTGATCTTTATATCACTTCACCAAATACCATAGTATAACCATATA
ATTCTTTCCTAATACACGTCCTTTTGCAAGATAGATCATGTTTTAATGCA
TAATACTAGTGCCCCAATAAGGAAGGCTTGAAATCATTTACATAAATTTA
TATCAATATTCTTTCCAATATTCTTTAATTTTGTGTAGTAATTATAACAG
TTACATTTTAGATACTATAAGGAATCTGAAGACAATTTGAAGCATACAAA
AGGCTGTGTGCATGGTGCTCTTAATCATTTTTCTATGTCACACTTATTTT
ATGTAAAGGTCTTGAAAATCTGTGTATTGCGGTCTCCAGAGACATCCTGT
AGCCTGCCTCCTAAGTTTTTGGTGACAGCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_p06.b1 MSMg01no052_p06.b1 CHROMAT_FILE:
MSMg01no052_p06.b1 PHD_FILE: MSMg01no052_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:43 2005
         (508 letters)



>mm_chrX_19536390_19537297
          Length = 908

 Score =  959 bits (496), Expect = 0.0
 Identities = 505/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatattgtaatacaaaaagaggtttttttccagacagtgaactgaggcaagtaccgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 708 atatattgtaatacaaaaagaggtttttttccagacagtgaactgaggcaagtacagacc 649

                                                                       
Query: 61  atctaggctagccagctcagtatgttcaacaactgaggagcattctcatgacaattctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atctaggctagccagctcagtatgttcaacaactgaggagcattctcatgacaattctta 589

                                                                       
Query: 121 aaaagctaactagctttgacagcagaaagtcatagccagatgaatcaatccatgtaagta 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 588 aaaagctaactagctttgacagcagaaagtcatagccagatgattcaatccatgtaagta 529

                                                                       
Query: 181 tatatgattgaactgttcccgaaaaggcttctgggtcatatacaaaccattgtctgaggt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tatatgattgaactgttccagaaaaggcttctgggtcatatacaaaccattgtctgaggt 469

                                                                       
Query: 241 catattgaaagctgcttcatgtgctgcctgctaagctgaaaggaagatagaaatatcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 catattgaaagctgcttcatgtgctgcctgctaagctgaaaggaagatagaaatatcctt 409

                                                                       
Query: 301 tgcttgattctacaacagttgggggctatcacataaagaaatggaatttttccctttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgcttgattctacaacagttgggggctatcacataaagaaatggaatttttccctttcta 349

                                                                       
Query: 361 ttgtcacaggagattttcttagaaggagaaagacatgcaagtagactttggctttgttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttgtcacaggagattttcttagaaggagaaagacatgcaagtagactttggctttgttga 289

                                                                       
Query: 421 gtatgagctggtatcatttaacgcattcaaatcttattggggtttctcatatttacagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtatgagctggtatcatttaacgcattcaaatcttattggggtttctcatatttacagcc 229

                                       
Query: 481 catttactggttttgagaattattttta 508
           ||||||||||||||||||||||||||||
Sbjct: 228 catttactggttttgagaattattttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no052_p06.g1 MSMg01no052_p06.g1 CHROMAT_FILE:
MSMg01no052_p06.g1 PHD_FILE: MSMg01no052_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:43 2005
         (300 letters)



>mm_chrX_19394552_19395251
          Length = 700

 Score =  572 bits (296), Expect = e-168
 Identities = 299/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctagggactgtgatatgaacaccttatgagaatctattattattatatttctataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctagggactgtgatatgaacaccttatgagaatctattattattatatttctataac 260

                                                                       
Query: 61  atacatgaagaaaaatcatgaagtaagtaattcagcaataaaattggacacaatatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacatgaagaaaaatcatgaagtaagtaattcagcaataaaattggacacaatatttaa 320

                                                                       
Query: 121 ccttgtataattgatagaataatagagaaaaatcagtaaagatgtagaagacttgctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgtataattgatagaataatagagaaaaatcagtaaagatgtagaagacttgctgat 380

                                                                       
Query: 181 aaatgtaattatatatttatatattgtttacatatactcggaattatcaatttgacttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgtaattatatatttatatattgtttacatatactcggaattatcaatttgacttca 440

                                                                       
Query: 241 ttgatctttatatcacttcaccaaataccatagtataaccatataattctttcctaatac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgatctttagatcacttcaccaaataccatagtataaccatataattctttcctaatac 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)