BAC Information

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BAC

Clone NameMSMg01-053P14
ChromosomeX (Build37)
Map Location 23,359,822 - 23,360,069
singlet/doubletsinglet
Overlap geneWdr44
Upstream geneKlhl13, EG635719
Downstream geneEG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206, LOC669000, LOC629204, EG546272, LOC100043216, EG546282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053P14.T7 (MSMg01no053_p14.b1)MSMg01-053P14.TJ (MSMg01no053_p14.g1)
ACCAG282035AG282036
length761701
length of high quality
(start - end)
147 (79 - 225)248 (67 - 314)
definitionCHROMAT_FILE: MSMg01no053_p14.b1 PHD_FILE: MSMg01no053_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:03 2005CHROMAT_FILE: MSMg01no053_p14.g1 PHD_FILE: MSMg01no053_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTCATCTTACCAATACCTAATCGGCTGAGAAGCACCTGGAAAAAA
AAAAAACAAAAACAAAAACAAACATTCAACATTTCTTAATCATCACGGGA
AATGCAAATCAAAACAACCTTGGAGATTCCACCTCACACCAGTTCAGAAT
GCCTCAAGATCAAAAATTCAGGTGTACAGACAGATGTTGGCTGAGGATTT
CGGAGAAAGAGGAACACCTCTTTCATTGCTAGTCGGGTCTTGCAAGCCTC
GTACAACCACCTCTCGAAGTCAGTCTGCTAGGTTCCTCTTTATATATCTG
GACATAATACTACCATGAATATCTATGCAATTCCTCTTCCTGGGCATATA
CCCTAGAAGATGTTCCAACTCGGTAATAGGAACACATGCCTCCACTATGT
TCATAGTACCCCTTATTTATAACAGCCAGAATCTGTTAAAGAACCCAGAT
GCTCCTCAACAGAAGAATGGATTATATACAATGTGGCACATTCACACCAT
GCGATTACGACTCTGGCTATTACCACCCATGGGCTTATTGACTTCCCTGC
ACCATTTGCATTTTTCTTGTACCATACTCATTCCGTAGCGATGCATTCCT
ATCCCGCATCACAAATCTTCCCACCATCTCCTACTCGACCGACCCGCCGC
TTACTATTCCCTTACCTTATCCCCCTCTCCTATATACTCTTCTGCCTCAC
CCCCCTCACAG
ACCGATGATGTGGGAGGCCTGGCGCCGCCTGCTCACAAATTTAGGTGACC
TATAGAATTTCCGCGAAATTCTCTTTGCAGCTCAGGCAGGCTTTGAACTT
AAGACCTTCTTGCCTCAGCCTCATCAGTATTTTAGATAATGAGCTGCACC
ACCAGTTCTGGGAACCCTATATTCTTAAAAAACCTTTGTGAGTTTCCTTA
ATATATGTTATAATATGTAATTGAAGATGGTGATGTGTTTAACGAGACAA
AGTTATAGAGTGAGTGATTGAACCTTTTTTTGTTCTCCCTGGTCATTTTT
CTTGTTCTACCTGATTCTTTTAGCCAATTTCAGCTGTCATTGAGACCTAA
CCTCAGCTCATACTTCTGTTGTTTCCCATTGCTATTTGCAATGTACGTAA
GAATGTATTTATCATGAATAACACGGATTACATGATATTTTGTTTATTGA
CTTACGGAATTGTTTACGTCGTTTTATTATTATTGTTCAATATGATAAAG
ATCATTATGTGGCTGTTTGCATGATTATACCTTGCATTTACACAATGTTT
TTTTCTGGATAATTATATTCTATGACTATTTATTATTTCCCAGCATCCTT
AGTTAGCACACGATTACCTATACTGCGCCCTTTCTTTCTATACTGTGCCG
CTTTTAGTGAGGCCTGTCTCTTTTTCTTCCTCATAAGGACTTTTTTCTTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_p14.g1 MSMg01no053_p14.g1 CHROMAT_FILE:
MSMg01no053_p14.g1 PHD_FILE: MSMg01no053_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:03 2005
         (248 letters)



>mm_chrX_23359622_23360269
          Length = 648

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctctttgcagctcaggcaggctttgaacttaagaccttcttgcctcagcctcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctctttgcagctcaggcaggctttgaacttaagaccttcttgcctcagcctcatca 260

                                                                       
Query: 61  gtattttagataatgagctgcaccaccagttctgggaaccctatattcttaaaaaacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gtattttagataatgagctgcaccaccagttctgggaaccctatattcttagaaaacctt 320

                                                                       
Query: 121 tgtgagtttccttaatatatgttataatatgtaattgaagatggtgatgtgtttaacgag 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgagtttccttaacatatgttataatatgtaattgaagatggtgatgtgtttaacgag 380

                                                                       
Query: 181 acaaagttatagagtgagtgattgaacctttttttgttctccctggtcatttttcttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaagttatagagtgagtgattgaacctttttttgttctccctggtcatttttcttgtt 440

                   
Query: 241 ctacctga 248
           ||| ||||
Sbjct: 441 ctatctga 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)