BAC Information

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BAC

Clone NameMSMg01-054B22
ChromosomeX (Build37)
Map Location 163,617,628 - 163,617,900
singlet/doubletsinglet
Overlap genenone
Upstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268
Downstream geneTmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054B22.T7 (MSMg01no054_b22.b1)MSMg01-054B22.TJ (MSMg01no054_b22.g1)
ACCAG282143AG282144
length760707
length of high quality
(start - end)
105 (45 - 149)273 (378 - 650)
definitionCHROMAT_FILE: MSMg01no054_b22.b1 PHD_FILE: MSMg01no054_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:14 2005CHROMAT_FILE: MSMg01no054_b22.g1 PHD_FILE: MSMg01no054_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCTATTCGAAGAGGATCCGCGGAATTCCTGCTTCACACACAGTACCT
AATAGTGCCATTCCCTATGAGCCTATGGGGGCTACTTTTATTCCACCCTA
CCACAGCATGTACATGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTG
TGTGTGAGAGACAGAGACAGAGATGCACCCCCTCTTTCCCCCCGCGCATT
GCTCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCTGCCCCC
TGCCCCCCCACCCCCCTCCCCCCCCCCCCCCCCCACCCCGCTCTTTTTTC
CCCCCCCCCCCCCCCCCGCCCCTCCCCCTCTTCCCTTTCTCCCCGCCCCC
CCCCATCCTCTCCCTTCCCGCCCTCCATCCCCCCTCCCCCCGTTCTCCCC
CCCCCCCCACCCCCCCCTTTCCATCCCTTCCTTTTCCCCCTCCTCCCCGC
CCCACCCCCCCCCCCTCCCCCCCCCCCCCCACGCCCCCGCCCCCCCCCCC
CCCCTCTCCCCCCTCTCTCCTCTCCCCCCTCCCCCCCCCCTCCCCCCGCC
CCTCTCTCCCCCCTCCCCCCCCCTTCCCCGCCCCTCCCCCCCTCCCCCCT
CCTTCTCCCCCCCCCCCTCTTTCCCCCCCCCCCCCCCCCCCCCTCTCCCC
CTCCTCCTCTCCCCTTCTCCTCCCTCCCCCCTCCCCCCCCCCCCCCCTCC
CCCCCCCCCCCTCTCCTCCATCCCCTCCCCTCCCCCCTCCCTCTCCCACC
CACCTCCCCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGCCTAGGAAATGAAAACAGAAAA
GCAACCCTGAACTTGGCAACCCATAGCAGCAACGTGGTTGCTGTGATCAC
AGGCTTGGCCAGCCCACTCTATTCTAGAAGCCTGAACTGGTCCTCAGAGC
CGACTCAGCCATTTCTCAACTACGGTGGGAGGGCTCTGAGGCCATGCGGT
TGATTCCTCTTCCTGACTAGACCAGCAGTAGCAGAGGTGGTGACAAGCTA
AACAGAAATACATGCATATGAAAACCAAGGACTCTAGAGAGCAGGACAAC
CAGGCCTATTTCAACAGCAAGGCTTGGGACTTCAGTTTCAATGCCACCAA
TTTAAATCAGTTTACTTTAGCTCTTTAAAGGAATGCACACACTTCCATGT
GCAGGGCTTTTTGTGTGCACACTGCAAGTGATTTGTTTTTGAAAAGATAA
CCTAGAATGATTGACAATATGTCACCTACGGTCTGGGGATATATATAACT
CAGTTGCTATAGTGATGGCCTGGCATGTACAAAGCTCTGAGTGTCTGTAT
GATTATGGCACATGCCTGCAAAGTCATTGCTGGAGAGGTGTGAGCAGGAG
GATTAGAAGTTCAAGGTCATTTTTGACTGCATACTTGAGTTTGAGGACAG
CCTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_b22.g1 MSMg01no054_b22.g1 CHROMAT_FILE:
MSMg01no054_b22.g1 PHD_FILE: MSMg01no054_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:14 2005
         (273 letters)



>mm_chrX_163617549_163618221
          Length = 673

 Score =  520 bits (269), Expect = e-152
 Identities = 272/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacttcagtttcaatgccaccaatttaaatcagtttactttagctctttaaaggaatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gacttcagtttcaatgccaccaatttaaatcagtttactttagctctttaaaggaatgca 293

                                                                       
Query: 61  cacacttccatgtgcagggctttttgtgtgcacactgcaagtgatttgtttttgaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 cacacttccatgtgcagggctttttgtgtgcacactgcaagtgatttgttttttaaaaga 233

                                                                       
Query: 121 taacctagaatgattgacaatatgtcacctacggtctggggatatatataactcagttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 taacctagaatgattgacaatatgtcacctacggtctggggatatatataactcagttgc 173

                                                                       
Query: 181 tatagtgatggcctggcatgtacaaagctctgagtgtctgtatgattatggcacatgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tatagtgatggcctggcatgtacaaagctctgagtgtctgtatgattatggcacatgcct 113

                                            
Query: 241 gcaaagtcattgctggagaggtgtgagcaggag 273
           |||||||||||||||||||||||||||||||||
Sbjct: 112 gcaaagtcattgctggagaggtgtgagcaggag 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)