BAC Information

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BAC

Clone NameMSMg01-054E20
ChromosomeX (Build37)
Map Location 108,102,033 - 108,102,259
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC245573, EG634340, LOC668530, LOC100043316, Pou3f4
Downstream geneCylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik, LOC100038989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054E20.T7 (MSMg01no054_e20.b1)MSMg01-054E20.TJ (MSMg01no054_e20.g1)
ACCAG282276AG282277
length690710
length of high quality
(start - end)
227 (322 - 548)244 (406 - 649)
definitionCHROMAT_FILE: MSMg01no054_e20.b1 PHD_FILE: MSMg01no054_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:27 2005CHROMAT_FILE: MSMg01no054_e20.g1 PHD_FILE: MSMg01no054_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTA
TTTCCTAACAGGTCCATGAACTGGTGACCATGCATTTAAACATATAACCC
AATGGTGTCGACATTCTCATTCAAGTGACCACAGCAGTGTAAAACAGTTT
TAAATAATTGGTTCCTTCATAAGATAACTCCTGACCACAATACTCTGTGT
CATATGTAATGACAAAATGGATCCTTCTCCACTGATGACCCATTCTTCCA
GGTGAACCACTGTCCAATTTTCTTGAGCTTTAAAAAATCTGTTTATAAAT
ACTGGTCCATGGAACATTGGGGATCTCCAGCTTTTTCTTAGTAAGTCATC
TATTCACAAATACTTCAACCAATAAATAAAATAAACGTTTAACTTTTTAA
ACTGCATGAGCTTCAATACTATACTTAGAGCCTCTACATCATACCTAGTT
TTATGTTCTTTCCCCAACTATTCAACACCCTCAAAATCCAGTACCGCACA
TATTCCCTAGACCTGCTTGAATGAATCTACAAACTCGTAACTTTTAGGAA
TTGTGTCAGCTACTTTTTCACTGGTAAAACACACCAAAAAGTGACTTATA
GAATGAAGAATTCACTTTGCCTTACAGTTCTAGACAGATAATCTATAATG
GCAAGAAAGCAAGGACCAATACTCGAGAGCAGGAAACTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATACTGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATTCA
AATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGA
ATACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGGAGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGAACATATGCTCCACTATGTTCATAGCAGGCTTGTTTATAATAGACAG
AAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACGCAATGGAATACTACTCAGCTATTAAAAAAATGAAT
TTATGAAATTCCTAGGGAAATGGATGGACCTGGAGGGTATCATCCTGAGT
GAAGTAACCCAATCACAAAGGAACTCGCACAATATGCACTCACTGAGAAG
TGGATATTAGCCCAGAGACTTAGGATACCCAATATATAAAATACAACTTG
CCAAGCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_e20.b1 MSMg01no054_e20.b1 CHROMAT_FILE:
MSMg01no054_e20.b1 PHD_FILE: MSMg01no054_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:27 2005
         (227 letters)



>mm_chrX_108101833_108102459
          Length = 627

 Score =  424 bits (219), Expect = e-123
 Identities = 225/227 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatctccagctttttcttagtaagtcatctattcacaaatacttcaaccaataaataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatctccagctttttcttagtaagtcatctattcacaaatacttcaaccaataaataaaa 260

                                                                       
Query: 61  taaacgtttaactttttaaactgcatgagcttcaatactatacttagagcctctacatca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacgtttaactttttaaactccatgagcttcaatactatacttagagcctctacatca 320

                                                                       
Query: 121 tacctagttttatgttctttccccaactattcaacaccctcaaaatccagtaccgcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tacctagttttatgttctttccccaactattcaacaccctcaaaatccagtactgcacat 380

                                                          
Query: 181 attccctagacctgcttgaatgaatctacaaactcgtaacttttagg 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attccctagacctgcttgaatgaatctacaaactcgtaacttttagg 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)