XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGGC
TACCAGAAGAATCCTGGGGGAACATTAATTCTAGACTTCAAGATACATAA
CTATAATAATAAAAATAATATGGGAATGGTATAAAAATAGACATATTGAT
CACTGAAAATAAAATATTATAAAACAAAAAGGTTTTATTTTCATCATAGA
TAGTCAAAAATAATAGAAGATTTAGTACCCTGTTTCAATAAATATTTATT
TGGAATATATATATATATATATATGTATACTGAGTTAAATTTATAGCAAG
TATTTTAACCTATTATACTATAAATCAGTAACACCTGACAAAAATATTGT
ATTTAATATGTGCCAAAGACATTGTGCATATTAACTCATTTATATATCAA
TATATTAGCTAATGTTTTTATTAATTATTTTATTTATTTACAGCCACAAT
GTTGCCCCCCTCATACTTCTTCACAAATTCTACCCCAATTCCTCTTCCCC
TTTGCCTCTTAGCGAGTGTATTCACCCACCCTGGGTATTACCACACCCTG
GGGTATCAAATCTACAGGATTAGGCATACTCTTCTCCCATGGAGGAGAGA
TAAATCAGTCCTCTGCTACTAAGTGTTCAGGGCCTTGGACTGGTGTATGC
TATTTGGTTGATGGTTCAGTCTCTGGGAGTTCTCACAGGTCCAGGA

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCTTAGGTCTGTGCCCCATTTTT
AAAATTAGATTATTTGGATTGGTGGTGTCTACCTTCTTTAGTTCTTTATC
AATTTTGGATATTAGCCCTTTATCTGATGTAGGCTTGGTGAGGGTCCTTT
CCTAAACTGTAGGCTACTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTA
AGAAGCTTTTCCATTTCATGAAGTCCTACTTATCAAGTATTGTTCTTAGA
AATTGAGCCATTCGTGTTCTGTCTAGGAAATTATTTCCTGTACCACTCTA
TTCAAGGCTATTTCCCACTTTCTCTTGTATGAGAGTCTTGGGAAGGGGGT
GCTAAATATCTATCTCTTTGCATTCTTCTACATGTAGATATCCAGTTAGA
TAATCATCATTTGTTGAAGAGGTTTTCATTTTTCCATTGTATGGTTTTAG
CCTCTTTATCAAAAATCAATTGTCCACAAGTACATAGGTTTATTTCTAGA
TCCTTGATTTGATTCCATTGATCAACCTGTCTGTTTCTGAACCAATACCA
TGCAGTTTTTATCACTATTGCTCTGTAGTACAGCTTGAGGTCAGGGATGG
TGATTCCTCCTGAAGTTCTTTTATTTTTCAGAATTGTTTTGGCTATCTTG
AGATATN

Query= MSMg01no054_p13.b1 MSMg01no054_p13.b1 CHROMAT_FILE:
MSMg01no054_p13.b1 PHD_FILE: MSMg01no054_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:16 2005
         (629 letters)



>mm_chrX_38502573_38503599
          Length = 1027

 Score = 1168 bits (604), Expect = 0.0
 Identities = 620/628 (98%), Gaps = 6/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatcctgggggaacattaattctagacttcaagatacataactataataataaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agaatcctgggggaacattaattctagacttcaagatacataactataataataaaaata 727

                                                                       
Query: 61  atatgggaatggtataaaaatagacatattgatcactgaaaataaaatattataaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atatgggaatggtataaaaatagacatattgatcactgaaaataaaatattataaaacaa 667

                                                                       
Query: 121 aaaggttttattttcatcatagatagtcaaaaataatagaagatttagtaccctgtttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaaggttttattttcatcatagatagtcaaaaataatagaagatttagtaccctgtttca 607

                                                                       
Query: 181 ataaatatttatttggaatatatatatatatatatatgtatactgagttaaatttatagc 240
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ataaatatttatttgga----atatatatatatatatgtatactgagttaaatttatagc 551

                                                                       
Query: 241 aagtattttaacctattatactataaatcagtaacacctgacaaaaatattgtatttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aagtattttaacctattatactataaatcagtaacacctgacaaaaatattgtatttaat 491

                                                                       
Query: 301 atgtgccaaagacattgtgcatattaactcatttatatatcaatatattagctaatgttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 490 atgtgccaaagacattgtgcatattaactcatttatatatcaatata--agctaatgttt 433

                                                                       
Query: 361 ttattaattattttatttatttacagccacaatgttgcccccctcatacttcttcacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttattaattattttatttatttacagccacaatgttgcccccctcatacttcttcacaaa 373

                                                                       
Query: 421 ttctaccccaattcctcttcccctttgcctcttagcgagtgtattcacccaccctgggta 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttcttccccaattcctcttcccctttgcctcttagcgagtgtattcacccaccctgggta 313

                                                                       
Query: 481 ttaccacaccctggggtatcaaatctacaggattaggcatactcttctcccatggaggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttaccacaccctggggtatcaaatctacaggattaggcatactcttctcccatggaggag 253

                                                                       
Query: 541 agataaatcagtcctctgctactaagtgttcagggccttggactggtgtatgctatttgg 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 agataaatcagtcctctgctactaagtgttcagtgccttggactggtgtatgctatttgg 193

                                       
Query: 601 ttgatggttcagtctctgggagttctca 628
           ||||||||||||||||||||||||||||
Sbjct: 192 ttgatggttcagtctctgggagttctca 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1027
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1017
Effective search space:   629523
Effective search space used:   629523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)