BAC Information

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BAC

Clone NameMSMg01-055L09
ChromosomeX (Build37)
Map Location 40,724,535 - 40,724,823
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039899, Sh2d1a, Odz1
Downstream geneGm362, LOC100039977, LOC100039987, LOC637141, Wdr40c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055L09.T7 (MSMg01no055_l09.b1)MSMg01-055L09.TJ (MSMg01no055_l09.g1)
ACCAG283307
length706693
length of high quality
(start - end)
---284 (56 - 339)
definitionCHROMAT_FILE: MSMg01no055_l09.b1 PHD_FILE: MSMg01no055_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:11 2005CHROMAT_FILE: MSMg01no055_l09.g1 PHD_FILE: MSMg01no055_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAAGTCAATATGTCAAAGTGGAGATCAGTTTGGGCCTCTCATCTT
CATCTTTTTTTTTTTTTTTGGCAGCACTGGAAAAAGTTCTGACTATCACA
AGTTCACACAAGGGACATGACTACCACGCAGTAGTTTCAGGCCAGAGATG
GTGGTTAATGTTCTATAATGCGAAGTGCAGCCCCTCCATAGCAAAATGTA
TCTTGCCCCAAATGACAATATTGCTGAGGTGGAAGAACTCTCCCTAAGTG
AATCTACTAAAATCTTAGAGCACTCTGAACTGACAATAACCATAAAGAAT
GTCATCTTGGATGTCATGACCAAGCATCTTAGAGCTTCTGTTAAGCACTT
TTAAAATATTACAAGATGGTTTTGCCTATAAGCTGACTTTAGCTTTATTT
TGAGGGGATTTCCTGGAATACTTTACAATAAAATCACTGTCTGTATTTAT
CTACTCTTTGATAGGATGTGAGGATTGCAACGTGTGTATGCCCACAGCAA
CCCGTTATAGCGCCTATAGGTTTTCCCTGAAAGACATTACTCCTATTGGT
CCAATTATAACGTAAAAGTTCCCATATTGCTATGCTTCTCTTGTCCCATG
TTAGAAGATCAATCCCGTACAGGTCCCGGCACTTTTTTTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_l09.g1 MSMg01no055_l09.g1 CHROMAT_FILE:
MSMg01no055_l09.g1 PHD_FILE: MSMg01no055_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:11 2005
         (284 letters)



>mm_chrX_40724335_40725023
          Length = 689

 Score =  478 bits (247), Expect = e-139
 Identities = 277/289 (95%), Gaps = 5/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtcaatatgtcaaagtggagatcagtttgggcctctcatcttcatcttttttttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aaagtcaatatgtcaaagtggagatcagtttgggcctctcatcttcattttttttttttt 260

                                                                       
Query: 61  tttt----ggcagcactggaaaaagttctgactatcacaagttcacacaagggacatgac 116
           ||||    ||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 261 ttttttttggcagcactggaaaaagttttgactatcacaagttcagaaaagggacatgac 320

                                                                       
Query: 117 taccacgcagtagtttcaggccagagatggtggttaatgttctataatgcgaagtgcagc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccacgcagtagtttcaggccagagatggtggttaatgttctataatgcgaagtgcagc 380

                                                                       
Query: 177 ccctccatagcaaaatgtatcttgccccaaatgacaatattgctgaggtggaagaactct 236
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctccacagcaaaacgtatcttgccccaaatgacaatattgctgaggtggaagaactct 440

                                                            
Query: 237 -ccctaagtgaatctactaaaatcttagagcactctgaactgacaataa 284
            ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gccctaagtgaatctactaaaatcttagagcaatctgaactgacaataa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 689
Length adjustment: 9
Effective length of query: 275
Effective length of database: 680
Effective search space:   187000
Effective search space used:   187000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)