BAC Information

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BAC

Clone NameMSMg01-056H05
ChromosomeX (Build37)
Map Location 19,211,644 - 19,212,125
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043098, EG628855, LOC385333, EG628871, LOC100043953, BC049702
Downstream geneLOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056H05.T7 (MSMg01no056_h05.b1)MSMg01-056H05.TJ (MSMg01no056_h05.g1)
ACCAG283858AG283859
length713706
length of high quality
(start - end)
500 (77 - 576)506 (73 - 578)
definitionCHROMAT_FILE: MSMg01no056_h05.b1 PHD_FILE: MSMg01no056_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:07 2005CHROMAT_FILE: MSMg01no056_h05.g1 PHD_FILE: MSMg01no056_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACCAGAATTCCTCTGTAAATGATAAACAAATCCAGCAATCTG
GCAGGATATAGCATCACCTTGCACAACCCAATAGCTTTTTTGAATACCAC
TAACAAATACACAGAGAAGCAGATCATGGACATGTCTCCACTCATTATTA
GTCTCAGAGAAAATAACTAAAATAGAATATCTCTGAGTAAACCTACCCAA
GGAAGTGAAGGACTCTATGTGAAAACAACCATTTTACCAAAAACTAGAGA
TTCAATGCAATCTCAATCAAAATCCTTATATCCAATTCTTCACAGAAATA
GGAAAAAAAATCCCCAAATTCATATGGACCCACAAAAGCCCTGAGACATC
CAACACATTCCTAAACAAAAAGATCAGTTCCAGATTCCATGATAGATTAC
ATATGGCCATAGTAATAAAAACAATATAGTAATGGCATAAAACTGACATG
TTGACCAATGGAATGGAATTGAAGACCCAAAGATGAGTACTCATAACTTC
AGCCAGTTAGTAGTTTATAAAGATGCCTAAACATAAGGTGAAGAAAAGAA
AGCACCTTTCAATAAATGGTGCTGGGAAAATTGGGTGACCACATACCAAA
GACTGAAATTAGATACAATCTATCACTTTGCACAAAAACTAACTTCCCGT
GGTATCAAAGAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCAGAAATTCACTCCTAGTCACTCCCATTCTCGGGGT
GTAATAGTGGGGTGATGGGCAAGCAACGAATCGGGAGCTGTCACGCCATA
TCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATTTTCC
CGGTTCGGAGTCTTCCTGAGAAACAAGCAATAAAGCTTTTGCCGTGGAAG
ATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAATAGGTT
TGGTCTCAGCTGTTTCTTGGGCTAAACAGCCTATGGCCTCCTCTGGGATA
AGACTTCACAGAGCTGAGAGTGACATGCCTACCCATTTCAATTAATGTCT
AGACTTCAACCCTTATAGTCTCATGACCACAGAAAATGGGACAGACTTTG
CTATTTTGTTGTATTTCTTCACAAACAAACAAATGCTTCTCCCTGAAGCC
TGATTACATGTCTTTATGGTAAACTCCAGATAAATGCATGCTCTAGATTA
GTGTGTTTATGTGTATGCTTCTGATAGATATACAGCCCATCCTTTCATCC
AGATGAGCAGTTCTCTGTAGATATCTTTTTCTATTTATTAGATATTATCT
TCACTTACATTTCAAATGCTATACCCTTTTCCTAGCTTCCTCTCTGAAAA
CCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_h05.g1 MSMg01no056_h05.g1 CHROMAT_FILE:
MSMg01no056_h05.g1 PHD_FILE: MSMg01no056_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:07 2005
         (506 letters)



>mm_chrX_19211220_19212125
          Length = 906

 Score =  864 bits (447), Expect = 0.0
 Identities = 474/483 (98%), Gaps = 2/483 (0%)
 Strand = Plus / Minus

                                                                       
Query: 25  gggtgtaatagtggggtgatgggcaagcaacgaatcgggagctgtcacgccatatcaggt 84
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 906 gggtgtaatagtggggtgatgggcaagcaacgaattgggagctgtcacgccatatcaggt 847

                                                                       
Query: 85  gctgaaacgtcacgctgcgggttataaaagcagcgccattttcccgg-ttcggagtcttc 143
           ||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||| 
Sbjct: 846 gctgaaacgtcacgctgcgggttataaaagcagtgccattttcccggtttggga-tctta 788

                                                                       
Query: 144 ctgagaaacaagcaataaagcttttgccgtggaagattctggtttgttgcgtctttcttg 203
           ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 787 ctgagaagcaagcaataaagctcttgccgcggaagattctggtttgttgcgtctttcttg 728

                                                                       
Query: 204 ccggtcgagcgggacgcaataggtttggtctcagctgtttcttgggctaaacagcctatg 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ccggtcgagcgggacgcaataggtttggtctcagctgtttcttgggctaaacagcctatg 668

                                                                       
Query: 264 gcctcctctgggataagacttcacagagctgagagtgacatgcctacccatttcaattaa 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gcctcctctgggataagacttcacagagctgagagtgacatgcctacccatttcaattaa 608

                                                                       
Query: 324 tgtctagacttcaacccttatagtctcatgaccacagaaaatgggacagactttgctatt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgtctagacttcaacccttatagtctcatgaccacagaaaatgggacagactttgctatt 548

                                                                       
Query: 384 ttgttgtatttcttcacaaacaaacaaatgcttctccctgaagcctgattacatgtcttt 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttgttgtatttcttcacaaacaaacaaatgcttctccctgaagcctgattacatgtcttt 488

                                                                       
Query: 444 atggtaaactccagataaatgcatgctctagattagtgtgtttatgtgtatgcttctgat 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atggtaaactccagataaatgcatgctctagattagtgtgtttatgtgtatgcttctgat 428

              
Query: 504 aga 506
           |||
Sbjct: 427 aga 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)