BAC Information

Click to search

BAC

Clone NameMSMg01-056L18
ChromosomeX (Build37)
Map Location 90,653,208 - 90,653,691
singlet/doubletsinglet
Overlap genePola1
Upstream geneMageb18, EG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx
Downstream geneEG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056L18.T7 (MSMg01no056_l18.b1)MSMg01-056L18.TJ (MSMg01no056_l18.g1)
ACCAG284070AG284071
length709709
length of high quality
(start - end)
423 (67 - 489)483 (74 - 556)
definitionCHROMAT_FILE: MSMg01no056_l18.b1 PHD_FILE: MSMg01no056_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:28 2005CHROMAT_FILE: MSMg01no056_l18.g1 PHD_FILE: MSMg01no056_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAA
TTCAACCCTCTGACGCTATAGGCCCCAAATAAACTCATTTATAAGTTAGC
TTGGTCATGATGTCATATCACACCAATAAAAAATAACTAATACAGCTACA
TAGCAAGTTATAGGACATCTAAGACTACATAATGAGACTGTGTCAAAACT
TTTTCTCTTACACACACACACACACACACACACACACCAAAGAGGAATGA
TACAGTGCTAAGAAAATGATGTAATTAGTAAAGTGTGGATACATAAACAT
GAGGACCCTGAGTTTGGATTTAAAATCATACACACAAAAAGCCAAGAGCC
ATGGCCCATGCCTTAATTCCAGCACTGGGAAGTCAGAGACAGATCCCAGA
AGCTCTCTGGCTAGACAGTCTAGCTCAAACAACAGGCTCCAGGTTCAATG
GAAGACACTGTCTCAAGAAATAATGATAAAGTGAAGAGCAATGGAGAACA
CTTAATGTTTGACATTTGCCCCTACCTACTTAGAAACATAACAGGGATAC
TTCATTTGAAATCTCCAAAACAGCTCTTTCTCTCAAATCTGACCATCCAG
AAAAAAATTTAAGCTAGGTAGTAACAAATCATTACCAAATATCTCCTTAT
CCTTCAGCCTCTAACAAGCTTTGATGGTTGACCTCCATAGCACCTTTTCG
ATGCTTTCT
TCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGTGGAAAAAAAAGAAAAGATGTCA
CTCCCAAACAAAGACAGGTGCTAAGCTGCGGGAGATGAGAGAAGGGGTGA
AAACAGTATCCAGCTTTAATAGCAAAAGCAAATGCTAGCTAATGGCCCAT
TCTTAGGAACTCGTTAAGTCATCTCTAAGCAACCAGAGGATAATACACTC
GTTATTTCTGCTGGTATGTTTCCTAAAAGTGAGGTGTATTGCTTTGAGCT
TAGAATATTAGTAGATAGTCTTTCTCACCTTTGTATTAACCTGTTGTCAC
AAGACCCCTTCTACCATCTAAGGCCTTCTTGATGGAATTACTATTAAATT
GAATGTTCATATTTTTTCTGTTTTCTTTGTTTTTTATTTTTTCTTTTTAA
CTTAGAATATGCTTAATTTAAGTAATGCTAACATCTTACAAGAGATTCTC
CCTTCCCCTCTTGGCTCACCTGCTGATATGTTTTATATATGACAAATTAT
TTAGAGTTTATACAAATTATTTAGAGTAATGTATTTTCCGAGTTAATATT
TTTGTAGAAAATAGCCATTTATCTTTAGATATGAATAGCTGAACTGTTGA
AGCTTAAGACAGGAAATGTTTTCAGCTCAAATTTTAAACTTGTTAACCCT
ATTGTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_l18.g1 MSMg01no056_l18.g1 CHROMAT_FILE:
MSMg01no056_l18.g1 PHD_FILE: MSMg01no056_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:28 2005
         (483 letters)



>mm_chrX_90653008_90653891
          Length = 884

 Score =  897 bits (464), Expect = 0.0
 Identities = 479/484 (98%), Gaps = 1/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtggaaaaaaaagaaa-agatgtcactcccaaacaaagacaggtgctaagctgcggg 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctggtggaaaaaaaagaaatagatgtcactcccaaacaaagacaggtgctaagctgcggg 625

                                                                       
Query: 60  agatgagagaaggggtgaaaacagtatccagctttaatagcaaaagcaaatgctagctaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatgagagaaggggtgaaaacagtatccagctttaatagcaaaagcaaatgctagctaa 565

                                                                       
Query: 120 tggcccattcttaggaactcgttaagtcatctctaagcaaccagaggataatacactcgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggcccattcttaggaactcgttaagtcatctctaagcaaccagaggataatacactcgt 505

                                                                       
Query: 180 tatttctgctggtatgtttcctaaaagtgaggtgtattgctttgagcttagaatattagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatttctgctggtatgtttcctaaaagtgaggtgtattgctttgagcttagaatattagt 445

                                                                       
Query: 240 agatagtctttctcacctttgtattaacctgttgtcacaagaccccttctaccatctaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatagtctttctcacctttgtattaacctgttgtcacaagaccccttctaccatctaag 385

                                                                       
Query: 300 gccttcttgatggaattactattaaattgaatgttcatattttttctgttttctttgttt 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 gccttcttgatggaattactattaaattgaatgttcatatttattctgttttctttgttt 325

                                                                       
Query: 360 tttattttttctttttaacttagaatatgcttaatttaagtaatgctaacatcttacaag 419
           ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 324 tttattttttctttttaacttagaatatgtttaatttatctaatgctaacatcttacaag 265

                                                                       
Query: 420 agattctcccttcccctcttggctcacctgctgatatgttttatatatgacaaattattt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agattctcccttcccctcttggctcacctgctgatatgttttatatatgacaaattattt 205

               
Query: 480 agag 483
           ||||
Sbjct: 204 agag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)