BAC Information

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BAC

Clone NameMSMg01-057A06
ChromosomeX (Build37)
Map Location 35,419,500 - 35,419,827
singlet/doubletsinglet
Overlap geneRhox10
Upstream geneUbe2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik
Downstream geneRhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057A06.T7 (MSMg01no057_a06.b1)MSMg01-057A06.TJ (MSMg01no057_a06.g1)
ACCAG284278AG284279
length773762
length of high quality
(start - end)
447 (140 - 586)328 (130 - 457)
definitionCHROMAT_FILE: MSMg01no057_a06.b1 PHD_FILE: MSMg01no057_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:49 2005CHROMAT_FILE: MSMg01no057_a06.g1 PHD_FILE: MSMg01no057_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTGTTTTTTTTNNTTTTTTTNNNTTTTGTTCCTTTTTTTTTCCTTC
TNTCCCCCACAACCCATTCACATCTATAAXXXXXXXXXXXXXXXXXXXXX
XXXXTTCAAGAGAATCCGCGGAATTCATGGTATATGCAAAAGTATCTTGG
TAAAGGCAGTAATATAAGATACTAAAGTAAAATCATCTATATTTGGAAAG
TAAAGATGTTTTCTAGGCTGACTTGATTTTAAATCATTTAATTTAATATT
TAATAACCATGTAAGTGTTGGAGTTTGCTGAAAGACCCTCACTCACAAAG
AGCACAGAGACCAAGATTGCTGCAAACTGCAAGAGGTTTATTAATCCAAC
ACATTGGGGCCCCTCAGCACGCAGACCAGAGGAGACCCTGAACAAACAAA
GAACACACTTTTTATACCTTGTAAGGGGCAGATTTAGGCATCAGGGCTAG
CTGGCTTATTCTAATTGGTGTGGCAAGTGACCCTTTCAAGCCGGTTTGCA
TGGGGTGACTATCTTTGGCCTAGTCTCTCACTCTGCCTGCCCTTGTGGTT
TTTCACAGCATTGTTTAGTTGGCCAGCTTCCTTACCTGGCTCTGCATCTG
GTCTGCTAGTATAGTTTGCGAAATCCCTTCAAAGGGGGAAGGGGCTGGGT
GGTCTTGAATTTATTTTAGATTCTACATAAGCTTTGATTTTGCCAAAATA
TATTGAGTTAACAGAGAGCTATGCCTAAATTAGAATTGTAAATGGTTTGT
TACCTGACCATGAAAATGACTGA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTGNTCNNCTCACTT
TTTTTACGATGCTATGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCCAGCTCAGGCCTCCTT
TCTCGAAAATATCCTAAAGTCAGCATCTCGTTTGAAGCACTCCTTTTGTC
AGGCTTCCTAATGGCAACTACGTGCCTCCGTGGGATGGATTCGCCTCTTC
ACGCCCACACAGACCCAACCCCCCCCCCACTTCCGTGCCTAAGTTTAGCC
ACACCCAGGAGCTAGTTAGGTGAATAGTGTGGGACATGCGCAGGATTTTA
GCCCGTGAACTAGGAGGTGCTCCAGAGTATGCTCCATCTGCAAAGCTCTA
GCAATGGAGAGCAAATACTTCTACTTCGACCTCGATTATTATGGGGTAAG
CTTCTATGAGGAAGTAATAATGACTGAATCTCAGCAGAGGGCTGCGGCCA
GGGCAGCCCAATGTCGCTTTGGAAGAGGTGTAAGACATCTGCACGAGCTG
GTCCAGGACTACCACCCGACCTTTAAATAAACGCAAAACTACGGCTCTGA
AATAATAAAGGAAATTCCAGTCCGTCCCCAAGAGCCCGAGAAAGCATCAG
GAGTAGCTTCCCTGACCCTCCAACAGTAAGCAGTACATCAATGCCCCAAA
TGTGGGAACTAAAAAATGGCTTTTCTAAAAACACCCATTAATCCTGAAGC
CCATCTCAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_a06.g1 MSMg01no057_a06.g1 CHROMAT_FILE:
MSMg01no057_a06.g1 PHD_FILE: MSMg01no057_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:49 2005
         (328 letters)



>mm_chrX_35419300_35420027
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtccagctcaggcctcctttctcgaaaatatcctaaagtcagcatctcgtttgaagca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtccagctcaggcctcctttctggaaaatatcctaaagtcagcatctcgtttgaagca 260

                                                                       
Query: 61  ctccttttgtcaggcttcctaatggcaactacgtgcctccgtgggatggattcgcctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccttttgtcaggcttcctaatggcaactacgtgcctccgtgggatggattcgcctctt 320

                                                                       
Query: 121 cacgcccacacagacccaaccccccccccacttccgtgcctaagtttagccacacccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgcccacacagacccaaccccccccccacttccgtgcctaagtttagccacacccagg 380

                                                                       
Query: 181 agctagttaggtgaatagtgtgggacatgcgcaggattttagcccgtgaactaggaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctagttaggtgaatagtgtgggacatgcgcaggattttagcccgtgaactaggaggtg 440

                                                                       
Query: 241 ctccagagtatgctccatctgcaaagctctagcaatggagagcaaatacttctacttcga 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccagagtaggctccatctgcaaagctctagcaatggagagcaaatacttctacttcga 500

                                       
Query: 301 cctcgattattatggggtaagcttctat 328
           ||||||||||||||||||||||||||||
Sbjct: 501 cctcgattattatggggtaagcttctat 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)