BAC Information

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BAC

Clone NameMSMg01-057O18
ChromosomeX (Build37)
Map Location 121,268,207 - 121,268,687
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057O18.T7 (MSMg01no057_o18.b1)MSMg01-057O18.TJ (MSMg01no057_o18.g1)
ACCAG284960AG284961
length670672
length of high quality
(start - end)
477 (20 - 496)345 (54 - 398)
definitionCHROMAT_FILE: MSMg01no057_o18.b1 PHD_FILE: MSMg01no057_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:02 2005CHROMAT_FILE: MSMg01no057_o18.g1 PHD_FILE: MSMg01no057_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTACTATAGTCCCAGAATCCGCGGAATTCTCACTTGGATCCCTCTTGTTG
TTAAGTTTCTTGAGTTCTGTGGATTGAATCCTAGGAAATCTGTACTTCTT
TGGCTAATATCCTCTTATTACAGTTCATTTTACTTTCAGATTTTATTTGT
ATTCGAAACAAGTAAAGTGTTACATTTATGATAAAAAAGATAAAATGTTG
AATAGATTCACAAAAAGAAATCTTAGTAATTTACTGTTTATTTACTATTA
CCTGGATGTTTTAATCATTATCATAGAGTATAAAATAAAATGTGAATGTG
AGAAAGAAATTTAGAGAACGAATTGGAGTGTAAGGATGGAAGTTGTCGAA
ATTTGGGTTTTGTTGTTATGAAGAGACCACAGTAATTTCTATAAACCGAA
GAACTTTGCTGGGGCTGACTTACAGTTTCAGTGGTTAATTTCATTATTGT
CTTGCCGAGAAACATGGTAGTTTTCAGGAAGATCTTTTGTTAGAGCCAAA
GATGAAGCCAAGAGCTCTAAATCTTCCTCCACAGGCAGCAAAAAGAGGCT
GTCTACACACTGGCCAGACATGAGCATATATGATCTCAAAACCTGCCTCT
AGTGACAGCCTTCCTTGATTGAGCAGCAGAGTAAAGCTGGCCCTAGATTT
GCGGCTTTCTGATCAGCTGC
GGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCCAGTTCCTTGCTCAGATCTCAAAGATGATGGTGTCATCTGTAGCTAT
GTAGTAAGATTCAGATGCAGTCCAGCACATCTGTAAGTGTCTGAAGTCCC
TTGAAAGATGGAGGATATTCATTTGTTTCTGATACAGCTGGGCAAGTAGC
TGAATGCAGTAGAGCCCTGTCAGTAGGTCTTGAGTGATGTGTCATTGCCT
GGGCTGAGATGGAAAGTGCCAGAGGCCCCAGGGCTGATTGCAAATGTGCT
AGATTCCCTGGACCAGATGGAAATATTTCTGCACCTCCTTTAGGAAAAGA
TGAATGTCTACCAGGTTCTTGAGGTGATGGTGGCAAAGTTCATAGACCAC
GCAAAGCAGATGGAGAAGATTCTATATCCTTCATTAGTTGAGGCAATGGG
CCCACAGTAGTCTCTGTGTCTTTACATTGTCCCATTCCCAATATCCTTGT
GGAATCTGCCAAAGGTTCTACATAACTTTGGTTGGATGACAAAGAAATTT
GCACAGTTCAAATTCTCTTTGCAGCTGTGGAACGTTTCTTAGACTTTAGA
GAGGTCAGAAAATATCCTTGAAATTCTGGACTAAAACGAGGGTGTACCTG
AGTTCCTAGTACAGATGGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_o18.b1 MSMg01no057_o18.b1 CHROMAT_FILE:
MSMg01no057_o18.b1 PHD_FILE: MSMg01no057_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:02 2005
         (477 letters)



>mm_chrX_121268067_121268943
          Length = 877

 Score =  652 bits (337), Expect = 0.0
 Identities = 443/483 (91%), Gaps = 12/483 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacttggatccc-tcttgttgttaagtttcttgagttctgtggattgaatcct 63
           ||||||||||||||  ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gaattctcacttgg-gcccttcttgttgttaagtttcttgagttctgtggattgtatcct 563

                                                                       
Query: 64  aggaaatctgtacttctttggctaatatcctcttattacagttcattttactttcagatt 123
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 562 aggaaatctgtacttctttggctaatatcctcttattatagttcattttactttgacatt 503

                                                                       
Query: 124 ttatttgtattcgaaacaagtaa-agtgttacatttatgataaaaaagataaaatgttga 182
           |||||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||
Sbjct: 502 ttatttgtattcgaaacaag-aacagtgttacatttgtgataaaaatgataaaatgttga 444

                                                                       
Query: 183 atagattcacaaaaagaaatcttagtaatttactgtttatttactattacctggatgttt 242
           ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 443 ataaattaacaaaaagaaatcttagtaatttactgtttatttactattacctggaccttt 384

                                                                       
Query: 243 taatcattatcatagagtataaaataaaatgtgaatgtgagaaagaaatttagagaacga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 383 taatcattatcatagagtataaaataaaatgtgaatgtgagaaagaaatgtagagaaaga 324

                                                                       
Query: 303 attggagtgtaaggatggaagttgtcgaaatttgggttttgttgttatgaaga------- 355
           ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||       
Sbjct: 323 attggagggtaaggatggaaggtgtagaaatttgggttttgttgttatgaagagacacta 264

                                                                       
Query: 356 -gaccacagtaatttctataaaccgaagaactttgctggggctgacttacagtttcagtg 414
            ||||||||||||| ||||||| | ||| ||||||||||||| ||||||||||||||| |
Sbjct: 263 tgaccacagtaattcctataaagcaaagcactttgctggggcagacttacagtttcagag 204

                                                                       
Query: 415 gttaatttcattattgtcttgccgagaaacatggtagttttcaggaagatcttttgttag 474
           ||| ||| |||||||||||||| ||||| |||||||| ||||||||| ||||||||||||
Sbjct: 203 gtttattccattattgtcttgctgagaagcatggtagctttcaggaaaatcttttgttag 144

              
Query: 475 agc 477
           |||
Sbjct: 143 agc 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)