BAC Information

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BAC

Clone NameMSMg01-058N11
ChromosomeX (Build37)
Map Location 66,298,327 - 66,298,450
singlet/doubletsinglet
Overlap genenone
Upstream geneEG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
Downstream geneAff2, EG666577, 1700020N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058N11.T7 (MSMg01no058_n11.b1)MSMg01-058N11.TJ (MSMg01no058_n11.g1)
ACCAG285660AG285661
length744743
length of high quality
(start - end)
124 (124 - 247)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no058_n11.b1 PHD_FILE: MSMg01no058_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:12 2005CHROMAT_FILE: MSMg01no058_n11.g1 PHD_FILE: MSMg01no058_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCGAAGAGGATTAGNGGAA
TTATTAATTTGCGAAAACTCAGCTTAAAGTAATTTCCTTATAATGCTTTT
TGGTTTTTCCCAGATTACCCCAAGCCTTTATATTGGAATTCTCCCAGAGT
CATAGTATTTTCTATATAGTAATCATCACAGTTACTGTACTTTTGTCTTG
TAATTTCTTTTGCCTATAGAATGTGAATTCCAAGAAGGCAAGGATTATGA
TAATTTTGATCACATGATAACCCTAAAACACAGGTTAATGTCTAACGTAC
GCAACACCATCAATATTTTTGTTTAATAAATAGATAAAACCAAGAGACAA
GATATTTTTTTTCCCCCCCCCCCCCCCTTATAAATAAAGCTTCTGCCTAG
TGTTATCTTCTGAAAGAAAAATAAAAAACATTATAGCTAGGGGTACTGTA
ATGAACTCATTAATACTTACTGAAATATTTGTGAGCCGTCTCATTTATAC
ATTCTGTTTATAAATTCTATTCATTATCTCCCTTACGCTTTTTATTAATT
TATTTCCTCCCCCTAACTTTATGATCTTCCCCCGTTTTCCATACTGTTAT
TGTTCTTCTTCTACTCATTTTCTTAATACTTCCCCATTATTTTTTTCTCT
TTAACTTGTTATTCCCCTTTTCTTACAATCCCTTATAACTGTTCGCTTAC
TGAATTATATTTCACAAACAATCGTTTTCTTGTACCCTCAATAT
ATGACAGAGGGTAGGCCTGGAGGNCGCCTTTTTCATAGGAGAGGGGAGGN
GACACTATAGATTTACATCAAGAAATTCTTAACAGAAACCTTATACATCA
GAAAAGAATGGGATCACATACCTCATATGCAGATAGAAAAATAAACTGTT
AAGGAGACAAATGGACCCATCAAAGCTGTCATTCATAAATAAAAGAGGAT
TAAAGATATTCACAGAGAAACAAAACTTTAGGGTGACCACTGCCATGAGA
TTTTTCATAACAACGCTAAAAGTTTGACTGCTTCTACATGGGGAAAAAGC
ATGCTAATGATGATTACAAATGCTTTTATAATACAAAACCGACTGGACAA
ATACCAGTGTGTAATTTCAAAACTCACAGTAGTATGGAATAATGAAAAAA
TCTGCGTCTGAACTTTTGCGATTAGCTAATTTTCACTTATTTGAATATAA
ATCGATTGAATTGTCTATAGACAGAATGCCTCCTCTTTCAAATAGGAGCC
AGATAATTTATGTAAAAAATCATTAAGACCCATTATACAGAATTATTCTT
GATCAAGCGGACCTATCAACACCTCTACAGAATATTTGTTTCTATATATA
AAAAAATACTCTACTTGTTCCTCCACTTGCATATTAAGAAAATTGTCTCA
TAAAGGGAATAAATGGTTTTTTCCAGGAAAAAAAATTTCATTAAAATATA
TAATTATAATCTGACATCTTTTATTTAAATTTATCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_n11.b1 MSMg01no058_n11.b1 CHROMAT_FILE:
MSMg01no058_n11.b1 PHD_FILE: MSMg01no058_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:12 2005
         (124 letters)



>mm_chrX_66298127_66298650
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctttatattggaattctcccagagtcatagtattttctatatagtaatcatcacagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctttatattggaattctcccagagtcatagtattttctatatagtaatcatcacagtt 260

                                                                       
Query: 61  actgtacttttgtcttgtaatttcttttgcctatagaatgtgaattccaagaaggcaagg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtacttttgtcttgtagtttcttttgcctatagaatgtgaattccaagaaggcaagg 320

               
Query: 121 atta 124
           ||||
Sbjct: 321 atta 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)