Query= MSMg01no059_d09.b1 MSMg01no059_d09.b1 CHROMAT_FILE:
MSMg01no059_d09.b1 PHD_FILE: MSMg01no059_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:39 2005
(569 letters)
>mm_chrX_93617937_93618905
Length = 969
Score = 1052 bits (544), Expect = 0.0
Identities = 561/568 (98%), Gaps = 4/568 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgttcccctctgagccccatttttaaatggggttatttgattttctggagta 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gaattctttgttcagctctgagccccatttttaaatggggttatttgattttctggagta 790
Query: 65 ctacttttcaaatagagtaaaacttcctgtattcttaaattccaaactaaaaacaaattg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctacttttcaaatagagtaaaacttcctgtattcttaaattccaaactaaaaacaaattg 730
Query: 125 aaggatttgaattacacagatccctgacaggaacacagatcacaaaggggataaatctaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aaggatttgaattacacagatccctgacaggaacacagatcacaaaggggataaatctaa 670
Query: 185 gtaataaaaataataaactaataagtataataaaagtaataaatttccaagataacaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtaataaaaataataaactaataagtataataaaagtaataaatttccaagataacaaag 610
Query: 245 ttcttgatacaaaagctagcaacttaaaaaaaagcccgaacattttttcactcccatcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttcttgatacaaaagctagcaacttaaaaaaaagcccgaacattttttcactcccatcag 550
Query: 305 tagctcctacaccctggctgattctgtttactgtgtctgatatgtcccttgctggtatct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tagctcctacaccctggctgattctgtttactgtgtctgatatgtcccttgctggtatct 490
Query: 365 cttgcactcaaggtttttttcctgtcttttacttcttgttcttcttcctgtttttgcttt 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cttgtactcaaggtttttttcctgtcttttacttcttgttcttcttcctgtttttgcttt 430
Query: 425 tgttgttattattattactattattattgttcttgttcttcttgttc-ttttttttcttg 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 tgttgttattattattactattattattgttcttgttcttcttgttctttttttttcttg 370
Query: 484 ttcttgttcttctttttcttcttgttcaccatgttgttgttattgttgttgttctc---c 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 369 ttcttgttcttctttttcttcttgttcaccatgttgttgttattgttgttgttctccttc 310
Query: 541 ttcttcttctctgcacaaatgtttattg 568
||||||||||||||||||||||||||||
Sbjct: 309 ttcttcttctctgcacaaatgtttattg 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_d09.g1 MSMg01no059_d09.g1 CHROMAT_FILE:
MSMg01no059_d09.g1 PHD_FILE: MSMg01no059_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:39 2005
(514 letters)
>mm_chrX_93507420_93508333
Length = 914
Score = 978 bits (506), Expect = 0.0
Identities = 512/514 (99%)
Strand = Plus / Plus
Query: 1 cctcagagtctagccccattattggttaatgatgaaaaataatggttccatttatacagc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cctcagagtctagccccattattggttaatgatgaaagataatggttccatttatacagc 260
Query: 61 ttccgtagttgaagaaatcattctgagagaatagggttttatttttctcttaaaagagca 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ttccgtagttgaagaaatcattctgagagaatagggttttatttttctctaaaaagagca 320
Query: 121 acaatgagattttaccaaattaaagggaaatatttgcaagtatacttttaaagacagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatgagattttaccaaattaaagggaaatatttgcaagtatacttttaaagacagttg 380
Query: 181 tctaggaggaattgtgtttccttattatttgtaaataagtgaggattttcttttaatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggaggaattgtgtttccttattatttgtaaataagtgaggattttcttttaatttt 440
Query: 241 attgttttatatatttcatgattttattattaatatatataattaatatacaattgcatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgttttatatatttcatgattttattattaatatatataattaatatacaattgcatg 500
Query: 301 acttacctccctctagtccctcccaagtcccatgcctttaactcagttcatgcattcacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttacctccctctagtccctcccaagtcccatgcctttaactcagttcatgcattcacc 560
Query: 361 ctcactcagcaaggaagattggtttttattttgttttgagacagtttctctgtgtagccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcactcagcaaggaagattggtttttattttgttttgagacagtttctctgtgtagccc 620
Query: 421 tgcctgtcctagaacttactctgtagaccaggctgacctagaattcacagagatccttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcctgtcctagaacttactctgtagaccaggctgacctagaattcacagagatccttct 680
Query: 481 gcctctgcctcccaagtgctgggattaaaggtgt 514
||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctctgcctcccaagtgctgggattaaaggtgt 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
