Query= MSMg01no059_d15.b1 MSMg01no059_d15.b1 CHROMAT_FILE:
MSMg01no059_d15.b1 PHD_FILE: MSMg01no059_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:41 2005
(630 letters)
>mm_chrX_91093383_91094413
Length = 1031
Score = 986 bits (510), Expect = 0.0
Identities = 576/628 (91%), Gaps = 47/628 (7%)
Strand = Plus / Plus
Query: 4 gaattctcctagttacctgattgaactgggtctccttctaattcctttcgtagcactata 63
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcctaactacctgattgaactgggtctccttctaattcctttcgtagcactata 263
Query: 64 tattcctcctctccag-acattgagaccttcaagagaatattcttttggcttagtgccag 122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattcctcctctccagcacattgagaccttcaagagaatattcttttggcttagtgccag 323
Query: 123 tctttctcttatgcctataaattccatattggaagagctcttgcccatttgctcaccagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctttctcttatgcctataaattccatattggaagagctcttgcccatttgctcaccagg 383
Query: 183 gagtcagtcctaggatcacttccagccaatagtaggaaagtaggtggctgagtctttgaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtcagtcctaggatcacttccagccaatagtaggaaagtaggtggctgagtctttgaa 443
Query: 243 cacttctaccaaccattatctacagtggtctcatgaagccgctgtttactcctcctttgt 302
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 444 cacttctaccaaccattatctacagtggtctcaggaagccgctgtttactcctcctgtgt 503
Query: 303 tagtttctgatagctgttataacacatggccacaaacttgatggcttttataaatcaaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagtttctgatagctgttataacacatggccacaaacttgatggcttttataaatcaaga 563
Query: 363 catttattatctcacagttctgaaggtcagaagacctaaaatcaaaggttgtgaacaggc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 catttattatctcacagttctgaaggtcagaagacctaaaatcaaaggttgtgaacaagc 623
Query: 423 atatggaaaacggccaataggcacacagtgccagttacatgccagttacatagtgtaggt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atatggaaaacggccaataggcacacagtgccagttacatgccagttacatagtgtaggt 683
Query: 483 attttctgatggtctactgcacagtgggcataataataataataataataataataataa 542
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attttctgatggtctactgcacagtgggcataataataataataa--------------- 728
Query: 543 taataataataataaatttttaaataaataaattttacatttcaaaggagctaaaggaac 602
|||||||||||||||||||||||||||||
Sbjct: 729 -------------------------------attttacatttcaaaggagctaaaggaac 757
Query: 603 cagccatgatggcattccaggtcctagg 630
||||||||||||||||||||||||||||
Sbjct: 758 cagccatgatggcattccaggtcctagg 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_d15.g1 MSMg01no059_d15.g1 CHROMAT_FILE:
MSMg01no059_d15.g1 PHD_FILE: MSMg01no059_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:41 2005
(115 letters)
>mm_chrX_91212327_91212841
Length = 515
Score = 207 bits (107), Expect = 2e-58
Identities = 113/115 (98%)
Strand = Plus / Minus
Query: 1 attcagttatagcttccagaatagaaaatgagttggccactgccggcacccatcacaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 attcagttatagcttccagaatagaaaatgagttggccactgccggcacccatcacaatg 256
Query: 61 atgttcagtcattcggtctttctgttgtttagcggctggtagtttccagtggggg 115
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 255 atgttcagtcattcggtcattctgttgtttagtggctggtagtttccagtggggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space: 54249
Effective search space used: 54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
