BAC Information

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BAC

Clone NameMSMg01-059M19
ChromosomeX (Build37)
Map Location 76,329,246 - 76,329,919
singlet/doubletsinglet
Overlap genenone
Upstream geneObp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337
Downstream geneEG629116, LOC636082, EG667736, LOC100041373, EG636104, 2410003J06Rik, LOC667749, LOC211702, LOC667755, LOC211705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059M19.T7 (MSMg01no059_m19.b1)MSMg01-059M19.TJ (MSMg01no059_m19.g1)
ACCAG286393AG286394
length727730
length of high quality
(start - end)
678 (43 - 720)300 (74 - 373)
definitionCHROMAT_FILE: MSMg01no059_m19.b1 PHD_FILE: MSMg01no059_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:23 2005CHROMAT_FILE: MSMg01no059_m19.g1 PHD_FILE: MSMg01no059_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCATTTCCTCTACTCAAATCATCTAAGATTTTTCTGGACTACAACTAC
TATGTACAATGTTAGGAATATTAACAGTAAATTGTGTTATAAGCAAGACA
CTTGCCATTTTACAGTAAAACTATGAGCTGACAGAGAAGGCAAAACTCTA
GTACACACATGTCAAGGAATCAGGGCACCACTCCTGCCACCAGGAAAACT
TCTTATGGATATCATTAATGATGCTTGATAGTTGTTGAGGCATCAATGGC
ATAATTACAAAATTTTGGCTGCCTTTTAGTTGTGGTATGATTTTGAGTGA
ATCGTCTAAAAGATATAAAGTCAGTATCCTTTTGAAAGTGCATTGTGAAT
ACCATATAAAATAATTACTCACAGATATTTTAAAAGCATTAAAGCATTAC
AGAAAATATACCTTATTATAACCCATTTCTCCAACCATTCACTATCTATA
GTACATCTCACTAATGTTTTAAGATGTTGACTTATATCCCAGAGTGCAGA
CAGTCTCTCCTCATTAGTTAGATGGTACCACATTCAAATCCTGTGTTCAC
TGTAACTCATCCTTCAAATCTTACTAAATTTTATTTTTTGCTTGTCTATT
CCAATGTATGTCCCTGTTCATAGAAAATTAATCATTCCATTTCCAGCATA
GATTTTCTGCCACTATATGCTTTTATA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGTAATATTGAATGGCTGAG
AAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAAATAAATGCGAAT
CAAAACAACCCTGAGATTCCACCACACACCAGTCAGAATGGCTATGTTAA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAAAGAGGAACTCT
CCTCCATTGTTGGTGGGAATGTAAGCTTGTACAACCACTCTGGAAATCAG
TCTGTCAGTTCCCCAGAAAACTGGATATAGTACTACCAGAGGATCCTGCA
ATACCTTTCCTGGGCATATATCCAGAAGATCGATCCAACCGGTAAGAAGG
ACACCTGCTCCACTATGTACATAGCAACCTTATGTATAATAGCCAAAGGC
TGGAAAGAACCCAGATGCTCCTCCACAGAGGAATGAATACAGAAAATGTG
GTACAAGGAATGAATACAGAAAATGTGGTACATTTACACAATGGAGTAAT
ACTCAGGTATTAGAAAGAATGAATTTATGAAATTCCTAGGCAGATGGATG
GACATGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAAGGC
ACACAATATTTCCTTACTGATGATTGGATTTAGCCCAGAAAGTTAGGATA
CCCAAGATATAAGATACAATTTGCTAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_m19.b1 MSMg01no059_m19.b1 CHROMAT_FILE:
MSMg01no059_m19.b1 PHD_FILE: MSMg01no059_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:23 2005
         (678 letters)



>mm_chrX_76329041_76330119
          Length = 1079

 Score = 1249 bits (646), Expect = 0.0
 Identities = 667/674 (98%), Gaps = 1/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcatttcctctac-tcaaatcatctaagatttttctggactacaactactatgta 64
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcatttcctcaaagtcaaatcatctaagatttttctggactacaactactatgta 265

                                                                       
Query: 65  caatgttaggaatattaacagtaaattgtgttataagcaagacacttgccattttacagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caatgttaggaatattaacagtaaattgtgttataagcaagacacttgccattttacagt 325

                                                                       
Query: 125 aaaactatgagctgacagagaaggcaaaactctagtacacacatgtcaaggaatcagggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaactatgagctgacagagaaggcaaaactctagtacacacatgtcaaggaatcagggc 385

                                                                       
Query: 185 accactcctgccaccaggaaaacttcttatggatatcattaatgatgcttgatagttgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 accactcctgccaccaggaaaacttcttatggatatcattaatgatgcttgatagttgtt 445

                                                                       
Query: 245 gaggcatcaatggcataattacaaaattttggctgccttttagttgtggtatgattttga 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 446 gaggcatcaatggcataattacaaaattttggctgccttttagttgtggtatgactttga 505

                                                                       
Query: 305 gtgaatcgtctaaaagatataaagtcagtatccttttgaaagtgcattgtgaataccata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgaatcgtctaaaagatataaagtcagtatccttttgaaagtgcattgtgaataccata 565

                                                                       
Query: 365 taaaataattactcacagatattttaaaagcattaaagcattacagaaaatataccttat 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taaaataattattcacagatattttaaaagcattaaagcattacagaaaatataccttat 625

                                                                       
Query: 425 tataacccatttctccaaccattcactatctatagtacatctcactaatgttttaagatg 484
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tattacccatttctccaaccattcactatctatagtacatctcactaatgttttaagatg 685

                                                                       
Query: 485 ttgacttatatcccagagtgcagacagtctctcctcattagttagatggtaccacattca 544
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 686 ttgacttatatcccagagtgcagagagtctctcctcattagttagatggtaccacattca 745

                                                                       
Query: 545 aatcctgtgttcactgtaactcatccttcaaatcttactaaattttattttttgcttgtc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aatcctgtgttcactgtaactcatccttcaaatcttactaaattttattttttgcttgtc 805

                                                                       
Query: 605 tattccaatgtatgtccctgttcatagaaaattaatcattccatttccagcatagatttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tattccaatgtatgtccctgttcatagaaaattaatcattccatttccagcatagatttt 865

                         
Query: 665 ctgccactatatgc 678
           ||||||||||||||
Sbjct: 866 ctgccactatatgc 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space:   714092
Effective search space used:   714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)