Query= MSMg01no061_a22.b1 MSMg01no061_a22.b1 CHROMAT_FILE:
MSMg01no061_a22.b1 PHD_FILE: MSMg01no061_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:56 2005
(368 letters)
>mm_chrX_80800337_80801106
Length = 770
Score = 671 bits (347), Expect = 0.0
Identities = 360/365 (98%), Gaps = 2/365 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgcctatgctaaggaataattagctttctctgttgagctttaattaatttct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgcctatgctaaggaataattagctttctctgttgagctttaattaatttct 264
Query: 65 atgttgtatttttatagctgttattaaataagccttgaggtataccaggtttggggacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttgtatttttatagctgttattaaataagccttgaggtataccaggtttggggacaa 324
Query: 125 aaaattcttaatctcagaatcttaatctcagaaatttccatggtattttacatcataaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaattcttaatctcagaatcttaatctcagaaatttccatggtattttacatcataaaa 384
Query: 185 gtactttattataataccttctacattgttgaacctaagagtttattagtggaggctatg 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtactttataataataccttctacattgttgaacctaagagtttattagtggaggctatg 444
Query: 245 tttttcaactttttttta--aataaatgcctagcactattgtatgtggtaagataaactc 302
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttcaactttttttttttaataaatgcctagcactattgtatgtggtaagataaactc 504
Query: 303 tccacaaaacatacaggcatactcatcatagacttggatttattttccagttttgagaaa 362
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tccacaaaacatacaggcatactcaacatagacttggatttattttccagttttgagaaa 564
Query: 363 atgac 367
|||||
Sbjct: 565 atgac 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 770
Length adjustment: 9
Effective length of query: 359
Effective length of database: 761
Effective search space: 273199
Effective search space used: 273199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_a22.g1 MSMg01no061_a22.g1 CHROMAT_FILE:
MSMg01no061_a22.g1 PHD_FILE: MSMg01no061_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:56 2005
(565 letters)
>mm_chrX_80966167_80967134
Length = 968
Score = 1031 bits (533), Expect = 0.0
Identities = 556/565 (98%), Gaps = 3/565 (0%)
Strand = Plus / Minus
Query: 1 aacatgcacacacttt---aaaaaaaaaagtttcaaggtaggattaatggctcttggaca 57
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aacatgcacacactttaaaaaaaaaaaaagtttcaaggtaggattaatggctcttggaca 706
Query: 58 ctacagaattttaaaatttctgatcaaattcaaatgagtagtattatttgacagaatcat 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctacagaattttaaaatttctgatcaaattcaaatgagtagtattatttgacagaatcat 646
Query: 118 tgttgaatgtagaaaacatgaatggttaaggagtagcccaatttaagaatgctatgtaca 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 645 tgttgaatgtagaaaacatgaatggttaaggggtagcccaatttaagaatgctatgtaca 586
Query: 178 tttagacaaaacagaagtattgttttttatcttttcatcataattttgatacttctatat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tttagacaaaacagaagtattgttttttatcttttcatcataattttgatacttctatat 526
Query: 238 gttagtagaaaaaatgtattgttccatggtttcctgatattaatgtttgtttgtagtaac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gttagtagaaaaaatgtattgttccatggtttcctgatattaatgtttgtttgtagtaac 466
Query: 298 cattattcaataaaaatgtggctgtttgcataattatttgctttttaccaccttcttgtt 357
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct: 465 cattattcaataaaaatgtggctatttgcataattatttgctttttactattttcttgtt 406
Query: 358 catttggccctagaaattgaacacacatcttgtatactttaagcaggcatcagactctca 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 405 catttggccctagaaattgaacacacatcttgtatactttaagcaggtatcagactctca 346
Query: 418 gtctttgagtaaatgttttctaaagttcttttaaacccaattaaataaaggaacaaagtc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtctttgagtaaatgttttctaaagttcttttaaacccaattaaataaaggaacaaagtc 286
Query: 478 actgaatatgaatgaaatccttcagaaattttgtgatgatttttgaaactcttttgtgtc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 actgaatatgaatgaaatccttcagaaattttgtgatgatttttgaaactcttttgtgtc 226
Query: 538 atattaataatttttgtacctttca 562
|||||||||||||||||||||||||
Sbjct: 225 atattaataatttttgtacctttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 968
Length adjustment: 10
Effective length of query: 555
Effective length of database: 958
Effective search space: 531690
Effective search space used: 531690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
