Query= MSMg01no061_d12.b1 MSMg01no061_d12.b1 CHROMAT_FILE:
MSMg01no061_d12.b1 PHD_FILE: MSMg01no061_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:08 2005
(366 letters)
>mm_chrX_81417449_81418215
Length = 767
Score = 679 bits (351), Expect = 0.0
Identities = 361/365 (98%), Gaps = 3/365 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcctc--atatccacattgctccttgcttcttgggacaaataaaatgggttg 61
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggaattcagcctcagatat-aacattgctccttgcttcttgggacaaataaaatgggttg 351
Query: 62 aagagaaagtgatcattgcttcattcttatcacttgacaatagtgaaagagcttgaattt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aagagaaagtgatcattgcttcattcttatcacttgacaatagtgaaagagcttgaattt 291
Query: 122 tatcaatgaagtttacattaatttattaaactgtttctcatatagagaattaaacattag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tatcaatgaagtttacattaatttattaaactgtttctcatatagagaattaaacattag 231
Query: 182 tggcattatgttgagggtttcatctccattttaataatttcatattatatttcactagta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tggcattatgttgagggtttcatctccattttaataatttcatattatatttcactagta 171
Query: 242 tattatagtatatgaatattttaaaataaatgatggaaaaggagatatattctatgcccc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tattatagtatatgaatattttaaaataaatgatggaaaaggagatatattctatgcccc 111
Query: 302 agtataggggaatgccagggccaggaagtgggagtgggcaggttggggagcagggagcag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 agtataggggaatgccagggccaggaagtgggagtgggcaggttggggagcagggagcag 51
Query: 362 gggga 366
|||||
Sbjct: 50 gggga 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space: 270606
Effective search space used: 270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_d12.g1 MSMg01no061_d12.g1 CHROMAT_FILE:
MSMg01no061_d12.g1 PHD_FILE: MSMg01no061_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:08 2005
(626 letters)
>mm_chrX_81344079_81345104
Length = 1026
Score = 1195 bits (618), Expect = 0.0
Identities = 624/626 (99%)
Strand = Plus / Plus
Query: 1 catagcaaacattatctatttaactgtgttttagtagtcactatacaaactctgtttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagcaaacattatctatttaactgtgttttagtagtcactatacaaactctgtttttc 260
Query: 61 cccactgctttctttgttcttgaatgctaataatcattattctaggcaaacaatgactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccactgctttctttgttcttgaatgctaataatcattattctaggcaaacaatgactgt 320
Query: 121 ttttgcttctaaatatgagtgggaataagcaatcacttctctgtgtcttgtgtctggctt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ttttgcttctaaatatgagtgggaataagcaatcacttctttgtgtcttgtgtctggctt 380
Query: 181 atttttattaaggtgtccttcacttaaatccctcttatttccaataacaaaatttcattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttattaaggtgtccttcacttaaatccctcttatttccaataacaaaatttcattc 440
Query: 241 tctcattgctaagtaatataacattgtatatctcatatttcattattcttccacccactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcattgctaagtaatataacattgtatatctcatatttcattattcttccacccactc 500
Query: 301 ataggtatctgtattcattctttctgtactagtgcttgaaaaaatacgaatctgctacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggtatctgtattcattctttctgtactagtgcttgaaaaaatacgaatctgctacag 560
Query: 361 cttggttttgtttcccagaaatttgataactggatcatatagtgttatttagtttttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttggttttgtttcccagaaatttgataactggatcatatagtgttatttagtttttttc 620
Query: 421 ttactttttctgaggaacctcatatggtttttcataatttttaaataaacattttcatag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactttttctgaggaacctcatatggtttttcataatttttaaataaacattttcatag 680
Query: 481 taatgattctagctacaactatatgtcattttcacttgcagtcacattttgctgataact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatgattctagctacaactatatgtcattttcacttgcagtcacattttgctgataact 740
Query: 541 agtcatgctcagcatgttaatttatttgtctgtatttattcttctgaaattagctgttta 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 agtcatgctcagcatgttaatttatttgtttgtatttattcttctgaaattagctgttta 800
Query: 601 aataattttacatttctaaacttttg 626
||||||||||||||||||||||||||
Sbjct: 801 aataattttacatttctaaacttttg 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
