BAC Information

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BAC

Clone NameMSMg01-061I15
ChromosomeX (Build37)
Map Location 38,798,112 - 38,798,254
singlet/doubletsinglet
Overlap geneGria3
Upstream geneLOC385344
Downstream geneLOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061I15.T7 (MSMg01no061_i15.b1)MSMg01-061I15.TJ (MSMg01no061_i15.g1)
ACCAG287725AG287726
length760803
length of high quality
(start - end)
51 (240 - 290)143 (69 - 211)
definitionCHROMAT_FILE: MSMg01no061_i15.b1 PHD_FILE: MSMg01no061_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:32 2005CHROMAT_FILE: MSMg01no061_i15.g1 PHD_FILE: MSMg01no061_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATACGCGGAATTCA
AGGACCATTTCCACAAATGATAAAAGCGATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGG
ACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGA
AGTATTAGCCAGAGTACTTCGACCACAAAAGGAGATCAAGGGGATACAAA
TTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGCA
GATATAAGTGACCCTATTATTTCCACCAGAGAACTCCTAAACCTGATAAA
CAGCTTCGGTGAAGTAGCTGGATATAAAATTAAATCACACTAGTCCAGGG
CCTTTCTCTACTCCCCCCCTATTCTGGTTGAGAAAGAAATTAGGGACACA
ACGCCTCTTTCTCAATAGTCACCAATAAATATACAATATCTGCGGCGTGA
CTCCAATTAAGGAAAGCGAACGACCTGTATGATAAAAACTTCAAGTCTTC
TGAAGAAAGAAATTAAAGAAAATCTCATAAGAATGGAAAGCACCTCCCAT
GCCACTTGAATTGGCCTGGATCCACACCCGCAAATATGGGTTACCCTCGC
CTTAAACCGATCCTTATAGTATTCCATGGCTTTCACCCTATCAAACTTGT
CCAATCCCAGTTCTTTCCACGATATTTCGCACGGACTTTTTCCTGCCCAC
TTCTTTCTGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGCCTTATATAAAGAGCTCTCACATTGTTA
ATTATAAGAAGAATGGGGATGAGTGCTAGAATTATGATCTATAGAAAGTT
CGGAGATCAGAGAAGACCATAATTAGTTCTAAAGATTTTACACAGGAATT
GACATTTTAATTGGACAAGGTGATATTTAAATAACATACTCCTTGGAAAT
AGGATGGGGGAGCTTCTTCCAGATACTGGAAATAGCATAAACCAAAACAC
TGTGATTTGAGCTTGCATGGCATATTTAAGAAGTAATATAGTATAAGACA
TGTGGTGGATGAGTTGTTTGCGAGTGCCACACATGATTAGCGCCCATCTC
TTTTTTTTTTTTTTTCCCACCCTTGGGGCTTTTTGTGCCTTATCCCGCCC
TATCCACCTTCATGTTTTCCATTTATTTTTATTATGTCGTTTGTTTTGAT
CTGCTTATTTCTCCGTTTTTTTTATGCGTCCCTTTCTTGGTGCCCCCTCT
GTCTCTTTTCTTCCCCCCCTTTTTATTTATTCCTATTTTTTCCCCTTTTA
TCCTTTTTTTTTTTACTCCTTCGCTCCTTCGCTTTATTTTTTAGACTCAG
TCCGTCCACCGCTTTTTTATTCCGCCTCTTTCCTTTCTCCTTTTTTATCA
CCTGCTAGCTCTTTTCCCTCCTCACCTTTTTTTTTTCCTTTTCTTATTTT
TTTCATTTTATTTTCGCTTTTCTTTTTTTCCCTACCCCCTTTCTCCCTTA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_i15.g1 MSMg01no061_i15.g1 CHROMAT_FILE:
MSMg01no061_i15.g1 PHD_FILE: MSMg01no061_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:33 2005
         (143 letters)



>mm_chrX_38797912_38798454
          Length = 543

 Score =  261 bits (135), Expect = 1e-74
 Identities = 141/143 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccttatataaagagctctcacattgttaattataagaagaatggggatgagtgcta 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caggccttaaataaagagctctcacattgttaattataagaagaatggggatgagtgcta 284

                                                                       
Query: 61  gaattatgatctatagaaagttcggagatcagagaagaccataattagttctaaagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 283 gaattatgatctatagaaagttcggagatcagagaagaccataattaattctaaagattt 224

                                  
Query: 121 tacacaggaattgacattttaat 143
           |||||||||||||||||||||||
Sbjct: 223 tacacaggaattgacattttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)