BAC Information

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BAC

Clone NameMSMg01-062A09
ChromosomeX (Build37)
Map Location 36,034,663 - 36,035,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1
Downstream geneEG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062A09.T7 (MSMg01no062_a09.b1)MSMg01-062A09.TJ (MSMg01no062_a09.g1)
ACCAG288095AG288096
length1,1651,176
length of high quality
(start - end)		801 (89 - 889)764 (84 - 847)
definitionCHROMAT_FILE: MSMg01no062_a09.b1 PHD_FILE: MSMg01no062_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:11 2005CHROMAT_FILE: MSMg01no062_a09.g1 PHD_FILE: MSMg01no062_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATGACTTTTTNTGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACCCCTTAGAAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTACTCATCAGGGAAATGCACACCAAAACAACA
CTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATT
GTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGAATCCGGAATACCTCT
CCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
TCCAGATGCCCCTCAACAAAGGAATGAATACAGAAAATGTGGTACATTTA
CACAATCGAGTACTACTCAGCTATTAAAATGAATGAGTTTATGAAATTCC
TAAGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGATAACCCAA
TCACAAAGGAACTCGCACAATATGTACTCATTGATAAGTGGATATTAGCC
CAGAAACTTGGGATACCCAAGATATAAGATACAATTTGCTAAACACATGA
AACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGA
ATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGAGC
TGTGACGAAAGGATGGACCAACTAGTGATTGCCATATCCAGGGATTCATC
CCATAATCAGCTTCCAAACACTGACACCATTGCATACACTAGCAAGATTT
TGCTGAAAGGACCCAGATATAGCTCTCTCTTGTGAGACTATGCCCGGGCC
TAGCAAACACAGAAGTGTATGATCCCAGGCCGGCTATTGGATGGGGCCCA
AGGGCCCCCAAAGGGGGAAGCTTAGAAAAAGTACCCCAGGGAGTTAAAGG
GGAACTGGCCCCCCTTTTTAGGGGGGAAAAACAATATGGAATTATCCCCG
TACCCCGGGGGGCCCTTTGACCTCAAGCGGGCAAATGTGTTCACAAAAAG
GGGCCCAAATCCGCT

CCGCTTATTATTNTCAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATTTCACTCCACAAAGAGAA
CTCCTTGTTTCTTCTCTCTGTTTTCCTTTAAAACCCAAACCTTTGTCTCT
AAGTCCTTCATGCCTAGAAACAATTACATTCCTTTGGGGCCTAGACCTCT
TCAAAGTAGTGGTAGATATGGCACCGTGTGTCCTGTACTGTACTTCTAAG
CATGATCTGTAGAAGCATCCCACACTTTGAATGGGTGACCACTCCAGTTG
TGTGGTAAGTGTCTTGTACCACAGGTTTTCTCTCCTTGTCTTAGTGACAT
GCAGGTGTCAGTATTTGATGTGCTCTTATCCTCAGCACACTGGCCTGACC
TGAGCATCTTATACAGGGCCTTGTTTACTTTAGAGATGAAGCCTCCATAG
GATCCAGCACCTAAGGGGCATTTCTGTTCCATGTAATCGCCAGTTTTTCA
TTTCCACTATCTGGTATCTTGTTACTGTGCAAAAGACAATTGCTCTCACT
TATTAAGAGTTTATGCTTACAACAGAGCATCCTGTAGCTTTGTGTATCAT
GCCTGGGGGATTCTGTTATTTCTATAATTTACAATGGAGAGAAGATTAAC
ATTCTCTGATCCTTCCCTTTTTTAGCCTAACAGGTCCTGGCATTTGTTCT
TAAAATATTTTAAATGCTGGTCTGTACTGTCAAAATACCTCAACTTCCTG
TTTTTTTTTCAGACCCATAAATATTAAGTCAGCATGGAAATACTGTAAAA
AATTATGTAGTCTGAATTATATTGGCCAACGACTTCTAGGTATGGAGTCT
GCTCTGAAGTGTGGTTGATATATCCAGTTTCACTTAATTGATTTTCCTGC
TCCTAGCAGCTATCAATTGCAAATAACTTCTTAGCTTGTGGTGGGACTAC
TTCCCTTCCCTTGTGCTGGAATTTTGGGGGGCTTGAACTTGTGCAAGCCT
GTTGCATGTTGCCCCAACCCTCTGGGAAATTTCTAAGTTCCTCAACCCTT
TGGCCAAAAAAAACATGTTTCTTGGGGTCCTTCCCCCCCATTAAACCTTT
AAAAACTTTTTTGGTCCCCCTCTTTAAATAATTTCTTGAAACCCACGGAG
AAGAAGATTTTTTTTTTCCCCACCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_a09.g1 MSMg01no062_a09.g1 CHROMAT_FILE:
MSMg01no062_a09.g1 PHD_FILE: MSMg01no062_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:11 2005
         (764 letters)



>mm_chrX_36034467_36035630
          Length = 1164

 Score = 1365 bits (706), Expect = 0.0
 Identities = 751/768 (97%), Gaps = 4/768 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactccacaaa----gagaactccttgtttcttctctctgttttcctttaaaacccaaa 56
           ||||||||||||    |||||||||||||||||||||||| |||||||||||||  ||||
Sbjct: 197 tcactccacaaacaaagagaactccttgtttcttctctcttttttcctttaaaaatcaaa 256

                                                                       
Query: 57  cctttgtctctaagtccttcatgcctagaaacaattacattcctttggggcctagacctc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctttgtctctaagtccttcatgcctagaaacaattacattcctttggggcctagacctc 316

                                                                       
Query: 117 ttcaaagtagtggtagatatggcaccgtgtgtcctgtactgtacttctaagcatgatctg 176
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 317 ttcaaagtagtggtagatatggcaccgtgtgtcctgtactgtatttctaagcatgatctg 376

                                                                       
Query: 177 tagaagcatcccacactttgaatgggtgaccactccagttgtgtggtaagtgtcttgtac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tagaagcatcccacactttgaatgggtgaccactccagttgtgtggtaagtgtcttgtac 436

                                                                       
Query: 237 cacaggttttctctccttgtcttagtgacatgcaggtgtcagtatttgatgtgctcttat 296
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 437 cacaggttttctctccttgtcttagtgacatgcagctgtcagtatttgatgtgctcttat 496

                                                                       
Query: 297 cctcagcacactggcctgacctgagcatcttatacagggccttgtttactttagagatga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 497 cctcagcacactggcctgacctgagcatcttatacagggccttgtttactttagagagga 556

                                                                       
Query: 357 agcctccataggatccagcacctaaggggcatttctgttccatgtaatcgccagtttttc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 557 agcctccataggatccagcacctaaggggcatttctgttccatgtaatcgccagtttctc 616

                                                                       
Query: 417 atttccactatctggtatcttgttactgtgcaaaagacaattgctctcacttattaagag 476
           |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 617 atttccgctatcgggtatcttgttactgtgcaaaagacaactgctctcacttattaacag 676

                                                                       
Query: 477 tttatgcttacaacagagcatcctgtagctttgtgtatcatgcctgggggattctgttat 536
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 677 tttatgcttacaacagagcatcctgtagcttcgtgtatcatgcctgggggattctgttat 736

                                                                       
Query: 537 ttctataatttacaatggagagaagattaacattctctgatccttcccttttttagccta 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttctataatttacaatggagagaagattaacattctctgatccttcccttttttagccta 796

                                                                       
Query: 597 acaggtcctggcatttgttcttaaaatattttaaatgctggtctgtactgtcaaaatacc 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 acaggtcctggcatttgttcttaaaatattttaaatgctggtctgtactgtcaaaatacc 856

                                                                       
Query: 657 tcaacttcctgtttttttttcagacccataaatattaagtcagcatggaaatactgtaaa 716
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 857 tcaacttcctgtttttttttcagacccataaatataaagtcagcatggaaatactgtaaa 916

                                                           
Query: 717 aaattatgtagtctgaattatattggccaacgacttctaggtatggag 764
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 aaattatgtagtctgaattatattggccaacgacttctaggtatggag 964


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1164
Length adjustment: 10
Effective length of query: 754
Effective length of database: 1154
Effective search space:   870116
Effective search space used:   870116
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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