BAC Information

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BAC

Clone NameMSMg01-062I11
ChromosomeX (Build37)
Map Location 117,141,014 - 117,141,842
singlet/doubletsinglet
Overlap geneLOC674318
Upstream geneLOC385417, Pabpc5, LOC236983
Downstream geneEG545741, LOC100039461, Pcdh11x, H2afb3, LOC245576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062I11.T7 (MSMg01no062_i11.b1)MSMg01-062I11.TJ (MSMg01no062_i11.g1)
ACCAG288482AG288483
length1,1631,197
length of high quality
(start - end)		818 (40 - 857)721 (82 - 802)
definitionCHROMAT_FILE: MSMg01no062_i11.b1 PHD_FILE: MSMg01no062_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:13 2005CHROMAT_FILE: MSMg01no062_i11.g1 PHD_FILE: MSMg01no062_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTGTTNNTAGCATTGGGCGTATACACTCACTAAGGGAGAGGATCC
GCGGAATTCATCTGTTATAATATTCCCATTAATGTTGTTTATCAGAAATT
GCATTTTTGTATTTTACTTTTATTTTATTTTATTCCCTAAACATATTTTA
TAATTCCAGACTTTATCCCAGTCCATCCTCTGACTGTTCTGCATCTCACA
GCTCCTCTCCTCACCCACCCCTAACTCCAAGAGGATGTCTGCACCCCCAT
CCTCACCAGACCCCCACTATCTGGGGCCTCCAGACTCTTGAAGGTTAGAT
TCATCTTCTCTGATTGAACCCAGATTCAGCAGTCCTCTGCTGTATATATA
TTGAGGTCCTCAAATCAGCTGGTGTATGCTGCCTGGTTGATGGCTCAGTG
TCTGAGAGATCTCAAGGTTCCAGGTTAGTTGATACTGCTGGTCTTCCTAT
AGGGTCACTCTCCTCTTCAGCTTTTTCCATCTTTACCGTAATTCAACCAC
AGGGATCAGCAGATTCTGTCCATTGGTTGGGTGTAAATATCTGCATCTGA
CTCTTTCAGCTGCTTGTTGGGCATTTTGGAGGGCAGTCATGATAGGGCTC
TGTAAGCACACCACAGCATCAGTATTAGTGTCATGCCTTGGGGCCTCCCC
CTGGGATGCATCCCAATTTGAGACTACAACTAAAGTGCTACAACATAGAT
GCAAACTTCATTCTGTAAGCTTAACAACCAGTAAATAGTGTGGTTATGTA
TTTGAAGGTTAAAATGATGAAAGCCAATGATGTGCATGCAAAATTTTGCT
AAAATGTTGCTTATTATAACTTGCAAGGTAAATTATACATGACTGCTTAT
ACTGTAGCTTTTAAGAACCAAAGCCTGAGATATGGTGTGACCTAGTTGTG
CTTTGTGTTTTCACAAAATATTTAAAAACATATTTGAGTAGTTTGAAAGC
ACAAATGAGCTGTTCCTATTTCAATTTTTTCCGAAAATCCCTTTTGGGTA
CAAAACCCTATACCCTTTTTTTAGTGGGCCAATAGGGAATAAAAAAGCTC
TTTAACCCTTTTTTTTTGATTTTTAATAAAAAATTTTTCCCCGGAAAAAT
TATAAATACCTTCTCTTTTTATAAATAATTTTTTACTATAAAAAACCCAT
TTTTTTAGTTTTT

CCGGTCACTTTTTTNACAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTTCTGGAGGAATTTTTGGGATCA
ATTAAGTATGTACAGCAAGTTCAGAGCACCACCCGGAGCCATCTCTGGAC
CAGGATCTCTCAGAGACTTGACAGTGTAGGTGAGAGTGCACAGCTTCTGG
GACAGGCTGAAACCACATAGCTTCTGGGGCAGACCCTGTTTCAGGCTCCA
GACATCCGGGCACCTTCCTGGCCAGAGGAGATGTGTCTGCCCCACCTGGG
AGGACTTTTCCAGAGCACCTGGGGGAGCCATCTACTTTCCTGGATTGCTC
GGAGACTAGTCTACACAGGTGAGAGTATGGACTACAGAAGCTAACAGCTT
CTGGAATGGGCTGAGGCCACAGGGCTTCTGGGGAAGGCCCCATTTCAGGC
TCCAGACATCCAGGCACCTTCCCTGCCAGAAGACAGGTGTCCACCCTGCC
TGGGAGGGCTTTTCCAGAACACCTGGGGGAGCCATCTACTTTCCCAGATC
CCTAGGAGACTAGTCTGCACAGGTGAGAGTATGGACTACAGAAGCTAACA
GCTTCTGGAATGGGCTGAGGCCATAGGGCTTCTGGGAAAGGCCCCATTTC
AGGTTCCAGACATCCAGGCACCTTCCTTGTCAGAGGAGAGGTGTCCACCC
CGCCTGGGAGGACTATGTCAGAGCACCTGGGGTTGTCATCTCCGGATCCT
TCAGAGACTGGTCTGTACAGGTGAGAGTGCCCAGGAGGGCTTTGCCAGAG
CACTTGAGGGAGCTGTCCCTGCTCCAGGATCTCTCAGAGACTAGACTAGA
CTGTGTAGGTGAGAGTGCCCACTACAGAAGCTGCACAGTTTCTGGACAGG
TGGAAACAGCTAGGCTTCTGTGACAGGCCTGTTTTAGGCCTTCATCTTCT
GCCGGTAGGCTTGTCCTAAGGCATATATCTGTGTACCTTTCCTACCTGTG
GAAAGGTTGTCTCGCTAAATAACTTTACCTTTGAAATTCTAAAAAAACTT
GTCTCTCCTGTCTTCCTGATTAAGCTTATACAATCTGGTAAATACCGCTT
CTTTCTGAAACTATTTTTCACCTTTTTCCATATATTCTCAGCCTCCTGTT
TATTAAACTTTTTTTTATTAATTCTCTCTCCCTCCCTTCTTTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_i11.b1 MSMg01no062_i11.b1 CHROMAT_FILE:
MSMg01no062_i11.b1 PHD_FILE: MSMg01no062_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:13 2005
         (818 letters)



>mm_chrX_117140825_117142042
          Length = 1218

 Score = 1429 bits (739), Expect = 0.0
 Identities = 795/829 (95%), Gaps = 24/829 (2%)
 Strand = Plus / Plus

                                                                        
Query: 14   ggaattcatctgttataatattcccattaatgttgtttatcagaaattgcatttttgtat 73
            ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 190  ggaattcatctgttataatatttacattaatgttgtttatcagaaattgcatttttgtat 249

                                                                        
Query: 74   ttta------------------------cttttattttattttattccctaaacatattt 109
            ||||                         ||||||||||||||||||  |||||||||||
Sbjct: 250  tttattttattttattttattttattttattttattttattttattctttaaacatattt 309

                                                                        
Query: 110  tataattccagactttatcccagtccatcctctgactgttctgcatctcacagctcctct 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310  tataattccagactttatcccagtccatcctctgactgttctgcatctcacagctcctct 369

                                                                        
Query: 170  cctcacccacccctaactccaagaggatgtctgcacccccatcctcaccagacccccact 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370  cctcacccacccctaactccaagaggatgtctgcacccccatcctcaccagacccccact 429

                                                                        
Query: 230  atctggggcctccagactcttgaaggttagattcatcttctctgattgaacccagattca 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430  atctggggcctccagactcttgaaggttagattcatcttctctgattgaacccagattca 489

                                                                        
Query: 290  gcagtcctctgctgtatatatattgaggtcctcaaatcagctggtgtatgctgcctggtt 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  gcagtcctctgctgtatatatattgaggtcctcaaatcagctggtgtatgctgcctggtt 549

                                                                        
Query: 350  gatggctcagtgtctgagagatctcaaggttccaggttagttgatactgctggtcttcct 409
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 550  gatggctcagtgtctgagagatctcagggttccaggttagttgatactgctggtcttcct 609

                                                                        
Query: 410  atagggtcactctcctcttcagctttttccatctttaccgtaattcaaccacagggatca 469
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  atagggtcactctcttcttcagctttttccatctttaccgtaattcaaccacagggatca 669

                                                                        
Query: 470  gcagattctgtccattggttgggtgtaaatatctgcatctgactctttcagctgcttgtt 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  gcagattctgtccattggttgggtgtaaatatctgcatctgactctttcagctgcttgtt 729

                                                                        
Query: 530  gggcattttggagggcagtcatgatagggctctgtaagcacaccacagcatcagtattag 589
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  gggcattttggagggcagacatgatagggctctgtaagcacaccacagcatcagtattag 789

                                                                        
Query: 590  tgtcatgccttggggcctccccctgggatgcatcccaatttgagactacaactaaagtgc 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  tgtcatgccttggggcctccccctgggatgcatcccaatttgagactacaactaaagtgc 849

                                                                        
Query: 650  tacaacatagatgcaaacttcattctgtaagcttaacaaccagtaaatagtgtggttatg 709
            ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 850  tacaacatagatgcaaacttcattctgtacgtttaacaaccagtaaatagtgtggttatg 909

                                                                        
Query: 710  tatttgaaggttaaaatgatgaaagccaatgatgtgcatgcaaaattttgctaaaatgtt 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  tatttgaaggttaaaatgatgaaagccaatgatgtgcatgcaaaattttgctaaaatgtt 969

                                                             
Query: 770  gcttattataacttgcaaggtaaattatacatgactgcttatactgtag 818
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  gcttattataacttgcaaggtaaattatacatgactgcttatactgtag 1018


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 818
Length of database: 1218
Length adjustment: 10
Effective length of query: 808
Effective length of database: 1208
Effective search space:   976064
Effective search space used:   976064
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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