BAC Information

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BAC

Clone NameMSMg01-063E02
ChromosomeX (Build37)
Map Location 154,038,954 - 154,039,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640803, LOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2
Downstream geneLOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2, EG667483, LOC671033, LOC667487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E02.T7 (MSMg01no063_e02.b1)MSMg01-063E02.TJ (MSMg01no063_e02.g1)
ACCAG289038AG289039
length757758
length of high quality
(start - end)
316 (113 - 428)248 (133 - 380)
definitionCHROMAT_FILE: MSMg01no063_e02.b1 PHD_FILE: MSMg01no063_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:32 2005CHROMAT_FILE: MSMg01no063_e02.g1 PHD_FILE: MSMg01no063_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCNCNNCC
CCTTTATTNNNCTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTGTTTCCCTCTGTACCCATTTTTAAT
GGGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATAT
TGGATATTAGCCCCCTATCAGATTTAGGATTGGTAAAAATCCTTTCCAAT
CTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAG
CTTTGCAATTTGATGAGGTCCCATTTATCAATTCTTGATCTTACAGCACA
AGCCATTACCGTTCTGCTTAGGAATTTTTCCCCTGTGCCCATATCTTCGA
GGCTTTTATCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATG
TGGAGGTCTTTGATCCACTTAGACTTGAGCTTTGTACAGGAGATAAGAAT
GGATCAATTCGCATTCTTCTACATGCTAACCGTCAGTTGTGCCAGCACCA
TTTGCTGAGAGTGCTGTCTTTTTTCCACAGGTAGACCTTAGCTCCCCTGT
AAAATTACACGGCGACCCTAGGTGCGTGAGTTCATTTCTAGGTCTTTCAA
TTCTATTCCCTTGATCTTTCCCTCTGTCTTTGTACCCGTAACCTTGTCCT
TTTTTATTCCCATTTGCCTGAGGTATTTGCTTAATGATTAGCCTATGGGT
GATTTAG
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNCCCCNNNNNNNTTTT
CGNCCTCTTCTATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAACTTTTTATATTTTC
TTGATGTTGTGTTAACCTTTGAGAATTTCTGAGGTGTGAATGCTAGCTAG
ATACTTACAAAATCTACTACTTGGAAGCTTATTTTTATTTTATACTTTAA
ATTTTAAATTTTAATTTATGCTAGTAAATTTTAAATAGTTAAATCTTTTA
ATCCCTCTAACACAAAAAAAATGACAGGGATTTGGCCAAAATGAAAAGTT
AAAATTATACTTACTGCTCAAAATTTCATAAATTAAACACGGTTGAAATT
TTATCTCCCTACTATTTTCCAAATGTCCTTCTGTACAAATGTGTTTTGAA
TTTGTACTTCTGAATTCCTAAGTTTATTGGTACACTTTATTTTTTTGATT
TGACCTTTGTTTGCTTTCCTGTAATGGCTTCTGTAGTTTTTAACCTTTGT
TCCTTTCCTGGATAGGAAGCCTCTTAAATTTTACCAACGGTACCTAGTTT
TCTTTTTCTGTTAACCCTGATATCTTCTGACTGGAAATTTTGTATCTGTC
TCACAAAAAACAACTTTACCCGGCTAGGCTTATCTGATTTACCTTTTATT
TTGCTTTCAGACAAATTAATTCCCGCTTTGCGAAATTTTTTTGATTCCCC
CCGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e02.g1 MSMg01no063_e02.g1 CHROMAT_FILE:
MSMg01no063_e02.g1 PHD_FILE: MSMg01no063_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:33 2005
         (248 letters)



>mm_chrX_154038754_154039399
          Length = 646

 Score =  449 bits (232), Expect = e-131
 Identities = 242/246 (98%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataactttttatattttcttgatgttgtgttaacctttgagaatttctgaggtgtgaatg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataactttttatattttcttggtgttgtgttaacctttgagaatttctgaggtgtgaatg 260

                                                                       
Query: 61  ctagctagatacttacaaaatctactacttggaagcttatttttattttatactttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagctagatacttacaaaatctactacttggaagcttatttttattttatactttaaat 320

                                                                       
Query: 121 tttaaattttaatttatgctagtaaattttaaatagttaaatcttttaatccctctaaca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaattttaatttatggtagtaaattttaaatagttaaatcttttaatccctctaaca 380

                                                                       
Query: 181 caaaaaaaatgacagggatttggccaaaatgaaaagttaaaattatacttactgctcaaa 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 --aaaaaaatgacagggatttggccaaaatgaaaagttaaaattatacttactgctcaaa 438

                 
Query: 241 atttca 246
           ||||||
Sbjct: 439 atttca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 646
Length adjustment: 9
Effective length of query: 239
Effective length of database: 637
Effective search space:   152243
Effective search space used:   152243
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)