BAC Information

Click to search

BAC

Clone NameMSMg01-063G13
ChromosomeX (Build37)
Map Location 128,850,870 - 128,851,161
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670449, LOC245600, EG631264
Downstream geneLOC665846, LOC665850, LOC665854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063G13.T7 (MSMg01no063_g13.b1)MSMg01-063G13.TJ (MSMg01no063_g13.g1)
ACCAG289156AG289157
length1,505685
length of high quality
(start - end)
---292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no063_g13.b1 PHD_FILE: MSMg01no063_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:45 2005CHROMAT_FILE: MSMg01no063_g13.g1 PHD_FILE: MSMg01no063_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAATTAAAANTTATATTTTTNANNATAATTAATATATATAATTAAAATT
ATANATAAANNTATTNATTTATATAATAGATATAAAGTTATTATTATATT
ATTTTATGTTATTATTAGAAATATTGTCACGAGAACAAGTACCNNTCTGC
GAATGAGATAAGCAAAATAAAATAATATAATACTATAAACCGTTACCTCT
TTTGTCTCTGGTCTATATGTTAGTCGAGCGCTAGATGTCGCCCGTACGTT
ATGGTTATAGTACATAGTCAAGTCTGTGTGNGCGCCGACGTTCATTCTTT
GCCTTATTGTCGGAGATTAGACCTACCAGTCCGTCAACTGGTGCGCGCGA
CATAGCACTAGACTACAGAACTCGGCACTTACGGCCGTGGGGCGTCTCCG
TTCAACATAGACCGATGCTGCAGTGACAACAGACGTGACGTAACGAACAN
CTAATGAGTAAGGACACGAGAATATGAGCGATACAGTAGGTTTNTATACA
GCATATGTATCGAGAGCGGGGTCGCGATGCGCGTGTGCGCGTGTCTGGCG
GCTCTGCTGTTGTATTCCGGCGGAGGGATAGTTCGCCGCGCGCGCTTGGG
CGAGCAAGTCAGCACCACACGCAATGAGAGCNCATACAGGGCGGCGCGGC
GCGCAGGTACCGGCGCNGACGCGAGGAGTGCGCCAGGACGCGTCTCGTAT
GACCGGATGCGCACGTCATGTTGTGCGTGCGAGCAACGCGCTGAGCGATT
GCGAACTCGGCAGCGACGCCGCTCGCATCGGCTCGCCAGTACACAAGGTC
TGGATAATAGGCGGACGGCGTATATCACTGCTCCTCTACCTCGTCATGCA
GTTCGAGCAGGCATAGACACAGTCAGATGCGACGCGATGATGGTCGCGCG
CGCGGTGAGAGCGATGCGGTACGCGCGTGTTAGCGAGCGCATGCGTGTGA
CACCTAAGCGATGAGCAGTACAGTATCGGCGACGCTGTCGAGGCGAGAGC
GGCGACGACGATGAAGGCTTGCTGTGTGCGTCATCCNCCACGTATACGAG
TACTATGTTATAAATATCGTATTCGCTAGCACACGCACACTACATATGCT
AACCATCACGTCGCGTATTATGTTTAGCATGTGATCTACGGCAACTATGC
GCTGAGATGTACATGTACGCCAGTAACGCATGTTGAAGAGTAGCGCGATC
GAGANTGCAGGAATTATTCTGTTGCTCCTGATCGCATAACGTACATACAC
GCGATCANGCACAGTCGCGAGTCCGCGAGCAGCATGCGGCGTGTGAGCGT
AAGCAGTGAGTGCGACGTGGCCGCGTATCTATACGCTATCGAGGAGCGAG
TTCCACGGNCGCCGCGTCAGTGGGNCAGTGGCACGTGTCGCGATGACTGG
ATGAAGTCTGTCGCGTGGTCGCGTAGTGATATCAGTCGGCGTGTGAGCGC
ATATCTCCGTGACACGCGNACGTNGCGCGCGCGGATACTCTGTAGCGAGA
TCGGG
CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTAACAAGAACTCTTATCTAGTTGA
AATTTTACAAAATATGCAGTGGAGATGATCAGACAGAAGAAGTACATGTA
TAACAGTGATCCAAGAATATTTTACCAGAGGGTCTCTGGTAGGGTTCTGC
AAAACATTGTCAATAAGAAAAACAAATCCTGTAGACATGGACATAAATAA
AATGGATAATGTGATGTAGTTAACATATCAAAATGTAATAAACTGGAATA
ATGAGTTGAATGAAGCAAGATGTAAAAAAAAAAAGTCTAACATTTTTCCT
ACAAATCTGCTCAGATGCATCGTTTTCATTATAATGGAGTGAAGAACTTT
GGGAATCTACTGCTCTACAAAACCTATGCAAACACTGAAAACAGTTAACA
GATTCACAACATGACAAATTAGCCAAAGCTTTCCCAACCTATGAAGGGCA
TTTATAAACTAAAAACTAGACTCTATGTGAAAAAGAAGTAAGGAATTTTA
TCTTCTTTGGCTCATGTATACATATTCCAGATCCATCATGCATATGAAAA
ACCACATTCTTTTAGTGACTATGTGAAAAGAACAGATTTGAAGTGCTGTA
CCCTCTCTTCCCCAGAGCACTGTCACATTTTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_g13.g1 MSMg01no063_g13.g1 CHROMAT_FILE:
MSMg01no063_g13.g1 PHD_FILE: MSMg01no063_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:45 2005
         (292 letters)



>mm_chrX_128850670_128851361
          Length = 692

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttaac-aagaactcttatctagttgaaattttacaaaatatgcagtggagatgatca 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttaacaaagaactcttatctagttgaaattttacaaaatatgcagtggagatgatca 260

                                                                       
Query: 60  gacagaagaagtacatgtataacagtgatccaagaatattttaccagagggtctctggta 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gacagaagaagtacatgtataacagtgatccaagaatattttaccagagggtctatggta 320

                                                                       
Query: 120 gggttctgcaaaacattgtcaataagaaaaacaaatcctgtagacatggacataaataaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggttctgcaaaacattgtcaataagaaaaacaaatcctgtagacatggacataaataaa 380

                                                                       
Query: 180 atggataatgtgatgtagttaacatatcaaaatgtaataaactggaataatgagttgaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 atggataatgtgatgtagttaacatatcaaaatgtaataaactggaataatgacttgaat 440

                                                                
Query: 240 gaagcaagatgtaaaaaaaaaaagtctaacatttttcctacaaatctgctcag 292
           |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gaagcaagatgt-aaaaaaaaaagtctaacatttttcctactaatctgctcag 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)