BAC Information

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BAC

Clone NameMSMg01-064D13
ChromosomeX (Build37)
Map Location 32,052,606 - 32,053,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743, LOC385298
Downstream geneLOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064D13.T7 (MSMg01no064_d13.b1)MSMg01-064D13.TJ (MSMg01no064_d13.g1)
ACCAG289757AG289758
length1,210716
length of high quality
(start - end)
422 (30 - 451)48 (77 - 124)
definitionCHROMAT_FILE: MSMg01no064_d13.b1 PHD_FILE: MSMg01no064_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:59 2005CHROMAT_FILE: MSMg01no064_d13.g1 PHD_FILE: MSMg01no064_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNGGGGGCTCTGGCGCTATAGACTACTAAGGGAGAGGATCCGCGGAATTC
TATCCCAGGTGGTTCCTGTTAGACCTTCTGTGTTTGCATTCCTCTGTTTT
ATGTAAGAATCCAGTAACCTCTTTCTACCTTGCGGGTATGTCACCCAACT
TCCTTATTGTCTTCTGTATAAAAAGTTTGATGCTCGATTTGACAAATTAC
ATTCAGATTCTACACAACCTCTCCTGTGTGCATCTTTCTGTCATTCATCT
GACGCTTTGCCCACCCGTGACTAGAGACCCGTTCCACGCAGACAAAGGCA
CCCAGAGGGTCTGCAGCAGGGTAACCTTTGAGAAGGTGATCAAAAGCAGA
GGAATGTAAAAGTCTTGGCTGAGCTCCACCCAGCAGACACCACCATTAAG
TAGGCCTCCAAGTACAGTGCACATATTCCTAGGAGTATTTTCAACATAAA
AGTATTCTGACCCCCCCAGTTTAGCTTCTCCTGAGGCCGAAATGAACTGG
CTAGGTAAAAACGTATCTTGGAAGGGGCAACTTTACTAATGAAAGCTTCC
AAACTAACAATCTACAATTGCCTATGATAGATCCTGAAAAATTACATATA
GGATTTTGGCTTAAAACTGGACTACTCAATTTCATTCCTTGATTTCTAAA
GXXXXXXXXXXXXXXXXXXXXXXTCCCCTCATCATGTATTCAAAAGAACC
AGGTTTTTGAAAGTCTGATTGAAAACAACCCTCTCTCTCCCCAATAGTTC
CAGGCCATAGAAAAAGAATTAGTCTTTCCTGGAAGACTAAATGTTAATCA
TGAACACTAACCAGTATCAAGCCAAGGAAAGAGACGCTGGAGCTCACCAA
CATCTATGTTAGGAAACTAACAGGCCTATAAGCTCCTAAAAACTTTATTC
TGCACCAGGTTATTGACCCAGATGAAAACAAGATGTTAGAAAATTTCAAG
GACCACTCTTTATTAAATGTGGGGGTTTTAAAATTTCTGTTCCCAAAATT
TGAATTTTTTAATTAAGTGTCTTCCTTGTATAGTTCAGTGTTTTTCTTTG
TTAATAAATTCTTTCCTTTTGTTTTTTGGTTTTATACTTTTCTCCTTATC
TTTATTCTATTTTTTATTATCTTCTTGCTTATTCTTCTACACTTTACCCA
TTTTTCTTTCTTCTCCCTTTCTTTTCTAAACTTAATATCTTATATTTTCT
TTTCTCTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGACAGCTGTGGGGTTGTGAATA
TTTGTTTATAGTGCAGTGATAGTAGGGGGCATTGGAATGTATATTTCTAT
ACAGGGCTTTATATAGTGGGCATGTGAACTCTGTGTGGAATGCAGTAGGC
AGTGGGAATGTGAATGCTGTTTCTATATAGGGCAGCAAAGCAGGGGGCAT
TAAAATATGTGTTCCTGTAAAGTGAAATACAGCAATGGGCCTGTGAATGT
GTGCTACTGTAAAGTACAGTGATGGCAGTAAACACGGAAATGTGTTCATT
TTAAGGTCTTTGAAAGCACCCCCCCGCGAATGTGTGTTTCTATGTAGGGC
AATATGCAGGGCCCACGCAAATGTGTGTTTCTGTAGAATGCAAAATGGCA
GTGAACATGTGAATGTGTGTTTCTGTAGTGGGGGGAACAACAGTGGAATG
GGAATGTATGTCTGCACAATTCAGGAAAGTAGTGAACTTGAATTGCGTGT
ATCTGTAAAGTTAACCATGTTGTGGCTCTGAGAATGTGTATTATTGCTTG
ATTACCCTGAACCCTTTCGACCCCCGAATATGTGCTTATCGTATTTTTCT
TTCCCTCTTACCCTTCCCCCGCTCCTCTTTTTCCCCATTCGTCATATCCT
CGCCTCCACTATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_d13.b1 MSMg01no064_d13.b1 CHROMAT_FILE:
MSMg01no064_d13.b1 PHD_FILE: MSMg01no064_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:59 2005
         (422 letters)



>mm_chrX_32052391_32053212
          Length = 822

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctatcccaggtggttcctgttagaccttctgtgtttgcattcctctgttttatgt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctatcccaggtggttcctgttagaccttctgtgtttgcattcctctgttttatgt 275

                                                                       
Query: 76  aagaatccagtaacctctttctaccttgcgggtatgtcacccaacttccttattgtcttc 135
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 aagaatccagtaacctctttctacgttgcgggtatgtcacccaacttccttattgtcttc 335

                                                                       
Query: 136 tgtataaaaagtttgatgctcgatttgacaaattacattcagattctacacaacctctcc 195
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 336 tgtataaaaagtttgatgcttgatttgacaaattacattcagattctacacaatctctcc 395

                                                                       
Query: 196 tgtgtgcatctttctgtcattcatctgacgctttgcccacccgtgactagagacccgttc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgtgtgcatctttctgtcattcatctgacgctttgcccacccgtgactagagacccgttc 455

                                                                       
Query: 256 cacgcagacaaaggcacccagagggtctgcagcagggtaacctttgagaaggtgatcaaa 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cacgcagacaaaggcacccagagggtctgcagcagggtaacctttgagaaggtgatcaaa 515

                                                                       
Query: 316 agcagaggaatgtaaaagtcttggctgagctccacccagcagacaccaccattaagtagg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agcagaggaatgtaaaagtcttggctgagctccacccagcagacaccaccattaagtagg 575

                                                          
Query: 376 cctccaagtacagtgcacatattcctaggagtattttcaacataaaa 422
           |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 576 cctccaagtacagtgcacatattcataggagtattttcaacataaaa 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)