BAC Information

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BAC

Clone NameMSMg01-064D19
ChromosomeX (Build37)
Map Location 69,748,239 - 69,748,522
singlet/doubletsinglet
Overlap geneGabra3
Upstream geneLOC667017, Hmgb3, LOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10
Downstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064D19.T7 (MSMg01no064_d19.b1)MSMg01-064D19.TJ (MSMg01no064_d19.g1)
ACCAG289766AG289767
length1,241748
length of high quality
(start - end)
424 (32 - 455)283 (70 - 352)
definitionCHROMAT_FILE: MSMg01no064_d19.b1 PHD_FILE: MSMg01no064_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:00 2005CHROMAT_FILE: MSMg01no064_d19.g1 PHD_FILE: MSMg01no064_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGAGCATCTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA
GCCAACATCAAAGTAAATGGAGAGAAGCCGCCCCCCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
AAAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTC
AATGGTCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACTTTCTTCTCCCCCCCCCCCAAATAATATAAAATATCTTGAAAA
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCA
ACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAAACAAAAACCT
AGGAATAGCAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCGGAATCAC
CATGCCCAACCTAAAGCTTTACTACGGAGCAATTGTGATAAAAAATTGCA
TGGTACTGGTATAAAGACTGACTAGTTGACCAATGCAATATAAATGAAAA
CCCTGAATTGAACCCCCCCACCTATGTTCCCTTTGATCTTTAAAAGGGAA
GCTATAACATCCTCGGTAAAAAAAACAGCCTTTTTTAAAAATTGTGTCTG
GCGTCTAACTGGGTGTTTTCTTTCTAAAAAATAAGGAATATCTATTCACT
CTTATTTTTTTGTTCTTCAATTCGTAACTCCTATTTGGTTTCTTAACTCT
TTCTCTTAATCCTCTCACACTTTGTACTCTATTATTTATAATTTGTCGTG
TAATATCTTTCCCTATATTTGTGTACCTCCTATCTAATATCTGTTATCTT
AATCCAACTTTGCTATCCTCTTTCTATTCACTATATATTAT
ATGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTTTGTCGTACTGTACAGTAAAGAGACAG
TCTTTGATCATTTTACCATGAACAAATAGCAAGCCTCCTCTCCTGACCGT
TTGTTATTTTTCTTCTTCACTTCAACAAGCTGGAAATTCTATTCTGATAG
GGACTTATTTTCTGCTCACTACAATTTCTTTAGCATCTAGCTAACTCTAC
CTAATATAAAGTATGCTCTCTATGCACAATTATAAGTAAATGATTAAATA
AATACTCATAAATGACTTCTAAAAGAATATCTCCCTGTAGTGATAAGTGA
AATTTTTATGAATACCCCCCCCCGCCAATCAGTACTGGCAAATGCATAAG
CTTTAAAAACCGCCCAATAATTGCTAAAAAATAAGGTAGAAAAACTAACT
GGAACAGGTTCCCTGGAAGGAGGTAGCAAAACATTTGAGGTAATACAGTC
TTATAAGATTTGGAAGGAGGGGCTGGTGAGATGGCTAAGTGGGTAAGAGT
ACCTGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAATAACCACATG
TTGCCTCATAACCATTTGCAACAAGATCTGACTCCCCCTTCTTGAGTGCC
TGATAATACCTACAGAGTATCTTTTCTATCCCATTTATCTCTATCTTCTC
AATATCTATTTGCATGTAAATAGCATACTTACTACTCCCTCTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_d19.g1 MSMg01no064_d19.g1 CHROMAT_FILE:
MSMg01no064_d19.g1 PHD_FILE: MSMg01no064_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:00 2005
         (283 letters)



>mm_chrX_69748039_69748722
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttgtcgtactgtacagtaaagagacagtctttgatcattttaccatgaacaaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttgtcgtactgtacagtaaagagacagtctttgatcattttaccatgaacaaatag 260

                                                                       
Query: 61  caagcctcctctcctgaccgtttgttatttttcttcttcacttcaacaagctggaaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcctcctctcctgaccgtttgttatttttcttcttcacttcaacaagctggaaattc 320

                                                                       
Query: 121 tattctgatagggacttattttctgctcactacaatttctttagcatctagctaactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattctgatagggacttattttctgctcactacaatttctttagcatctagctaactcta 380

                                                                       
Query: 181 cctaatataaagtatgctctctatgcacaattataagtaaatgattaaataaatactcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaatataaagtatgctctctatgcacaattataagtaaatgattaaataaatactcat 440

                                                       
Query: 241 aaa-tgacttctaaaagaatatctccctgtagtgataagtgaaa 283
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatgacttctaaaagaatatctccctgtagtgataagtgaaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)