BAC Information

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BAC

Clone NameMSMg01-064F10
ChromosomeX (Build37)
Map Location 140,472,055 - 140,472,268
singlet/doubletsinglet
Overlap genenone
Upstream geneRgag1, LOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064F10.T7 (MSMg01no064_f10.b1)MSMg01-064F10.TJ (MSMg01no064_f10.g1)
ACCAG289838AG289839
length719735
length of high quality
(start - end)
316 (37 - 352)---
definitionCHROMAT_FILE: MSMg01no064_f10.b1 PHD_FILE: MSMg01no064_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:11 2005CHROMAT_FILE: MSMg01no064_f10.g1 PHD_FILE: MSMg01no064_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:11 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAG
AAGAAAGAACTTATGGCATAGCACTGAGGCAATGGCACAAGGAAATAACT
GGTTGATAGAAAGTGTCCCTGAGTTTCTGAATGATGCAAGCCTTTATTGC
TGCATAGCCAAAGGGAAACAGAAATCTTTCACAAAAATCAAAGAGAGGAG
CCAAATAAACACCTTTCATCTAGCAAGATCAAAAACTGCTCTTAGAAAAC
TGGCAAAGTGTACAAAACAGGCAAAACAAGTTTCTGTGTCAGTAAAGTAG
GATCTTCACTTATAGCCTCAATTTTACACTTTCTCAGTGTACCAATTTCT
ATTTTACACCCACCTCCCCAAGAATCAGCTTGACTAAGTGTTTAATAAAC
AATCCTGTGCAACTATATTCTAGCTGCATCATTGGACTCAAACTGAATTT
TCCATGTGTTGCCACTGATGTGAGCCATTATCCTGTTGTGCTTCAGGAGA
TTTATATGACCTTCAACAAGCAATCCAAATATGAAAATGAATAAGAACCC
AACTTGCTAACTGTGACAGACAAAACAATTCTTTAAGGCCACTAGCGCTA
CATTCAGGAGTCCAACTTTGTCTGTGTTCTGAATCTAGTCAAAAACAGTT
AAAATATTGCAAATAAAACTTGCATCTGTACTATAAATAGATTACTGTTT
TGCCCTTATTCTCTGAACA
CGATGAAGTNGGTAGCCTGGCGGCCCCCCGGNCCTCCAACTTACGGGAAA
CAATAAAAGAACCCGGGAATTCCCAACCCATGGTTCAGCTCAAGGACTTT
CTAGGACATTGGAACACTGGCAAAGGGTTAACTATGGCCGAAATCAATAT
TAAAAGGCACTTATTATAAGATATTACTAAAAGAAAGCCCATGGATCTGG
ACACCAAACTAACAAGGGGATAGGGTATGAATATATGGGTTAAGAAAATG
CCAAAGCTCCCGGAGGTGAATTCCCTTTGAAACCCTTTGACCCCTGAGCG
CTTCCCGGGCTCTTGGACTGCCTAGCGGACCTCCCTACAGGGGGCATGGG
CGGCAACCTGGATAAATTCCCAGCCAGGACCTAAGGGTCTATTTTGGANA
TGGATGGGGAAACCCCCCCATGAAAACACAAAAGCCCGGATCGGTTCGAC
AAAAAATAAAAAATACAAAAAAGAACCGAATTCCCGGAATCCTTTGGATG
AAACCAGGGTCCCTGGTCCCGCTACCAAACTTGGCTCCCCAAAACTTCCA
ATATTGGGACCAAGAGTGGTAATAACCCCTGGGTTTTAACCTTAGCCCTT
CAGAACCCGAACCCTCCACGATTTCCAGGTCCCCCCGGCTTCCACCCTGG
GTCCCTCTTTCCTCTCATCCCCCCAATGAAACCCTGGACCTACCCTACCT
CTCCCTTGAATCACTCCCTTTCGTCTTTTGCGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_f10.b1 MSMg01no064_f10.b1 CHROMAT_FILE:
MSMg01no064_f10.b1 PHD_FILE: MSMg01no064_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:11 2005
         (316 letters)



>mm_chrX_140471760_140472473
          Length = 714

 Score =  223 bits (115), Expect = 2e-62
 Identities = 191/217 (88%), Gaps = 4/217 (1%)
 Strand = Plus / Minus

                                                                       
Query: 96  tgatgcaagcctttattgctgcatagccaaagggaaacagaaa-tctttcacaaaaatca 154
           ||||||||| ||| || ||||  |||||| ||||||||||||| || |||||||||||||
Sbjct: 509 tgatgcaaggcttcatggctgtgtagccagagggaaacagaaattc-ttcacaaaaatca 451

                                                                       
Query: 155 aagagaggagccaaataaacacctttcatctagcaagatcaaaaactgctcttagaaaac 214
           ||||||| | ||||| |||| ||||||||| |||||||||||||| | |||  |||||||
Sbjct: 450 aagagagcacccaaacaaacccctttcatccagcaagatcaaaaaattctcaaagaaaac 391

                                                                       
Query: 215 tggcaaagtgtacaaaacaggcaaaacaagtttctgtgtcagtaaagtaggatcttcact 274
           |||||| |||| |  |||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 390 tggcaaggtgtgc--aacaagcaaaccaagtttctctgtcagtaaagtaggatcttcact 333

                                                
Query: 275 tatagcctcaattttacactttctcagtgtaccaatt 311
           ||||||||||||||||| ||||||| |||||||||||
Sbjct: 332 tatagcctcaattttactctttctcggtgtaccaatt 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 714
Length adjustment: 9
Effective length of query: 307
Effective length of database: 705
Effective search space:   216435
Effective search space used:   216435
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)