BAC Information

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BAC

Clone NameMSMg01-064I23
ChromosomeX (Build37)
Map Location 85,633,372 - 85,633,485
singlet/doubletsinglet
Overlap geneEG667883
Upstream geneIl1rapl1, LOC667876
Downstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064I23.T7 (MSMg01no064_i23.b1)MSMg01-064I23.TJ (MSMg01no064_i23.g1)
ACCAG289996AG289997
length1,2151,243
length of high quality
(start - end)
705 (89 - 793)114 (68 - 181)
definitionCHROMAT_FILE: MSMg01no064_i23.b1 PHD_FILE: MSMg01no064_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:35 2005CHROMAT_FILE: MSMg01no064_i23.g1 PHD_FILE: MSMg01no064_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCCTTCCNNNNNNNNTCACTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTAAAATATCACTATTTGCCCATTAAATGATCATATACATA
AGTGACCCTCAAGAACTCCCCTTGAGAATTCCTAACGCTGATAAACAACT
TAAGCATAGTGGCTGGATATAAAAATTAACTCAAACTAAACAGTAGCCTT
CCTTTACTCAAAGAAAAACAGGCTAAGAAAGAAATTAAGGAAACAGCTCT
CTTCACAATAGGCACAAATAATGTAAAAGACCTTGGAGTGACTCTAACCA
AGCAAGTGAAAGCTCTCTATGGCAAGAACTTCATGTCTCTGAGGAAGGAA
TTGAAGATCTCAGAAGATGGTAAGACCTCCCATGCTCATGGATTGGCAGG
ATTAATTTAGTAAAAATGGCCATCTTACCTGAAAGCAATCTACATATTCA
ATGCAATCCCAATCAAAACTCCAACTCAATTCTTCATAGAATTAGAAAAA
ATAATTTGCAAATTCATTTGGAATAACAAAAACCCTGGATAGAAAAAACT
CTTCTTAACAATAAAAGAAATTCTGAAATTATCACCATCCCTGACCTTAA
GCTGTACTACAGAGCAATTCTAATAAAAACTTCATGGTATAGGTGCAGAG
ACAGGCAGAAAAATAAACAGATTAGAATTGAAGACCCAGAAATGAACCCA
CACACCTACGGTCACTTGATCTTTGACAAAAGAACTAAAACCATCCAGTG
GGAAAAAGACAGCATTTTAAACAAATGGTCTGATTCTCCTGGAGATCAGC
ATGAAGATCAATGCAAATGGATCCATTCTTATCTCCTTGAACAAAGATGA
AGTCCAAGTGCATCACGGACTTTCACAGAAAACCAGAGATACTGAAACTA
CTAGAAGAGAAAGTGGGGAAGAGCCTCAAACACATGAACACAGGGGAAAT
TCTCCAAAATAAAACCAGAAATGGCTTAAACTTTAAGAATCAGAATTTTG
AAAATGGGAACCTCCATAAATTGCCAAAGCTTCTGGTAGGCAAAAGGACA
CTGGTTAAATAGGGCAAAAACAGCAAACAAGAAATTTGGGGAAAAGGCCC
TTTTACCAATCCTTAACCGGAGGGGTTAAAATCCCACAATTTTTAAAGGG
ACCTCCCGAAAAATTTAAGCGCTAAAAAAACTAAAAAATACCCTATTTAA
AAAAGGGGGTGCCTC
NNTTTTGAGTGAGCNGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAGAATTCCCAGAATGTGGGAGATTTCATGAA
GGCTATTTAATATTAAATAAAACCCTCTATCCCCTCCCCCCCACCCCCCT
GTTCCCCAACCCACCCATTCCCAATTTCCTGTCCTGGCATTCCCCTGCAT
TTGGTCATTGAGCCTTCACAGTACCAAGGGCCTCTCCTCACACTGATGAG
CTACAAGACCACGCGCCTTTTAAAAATGGAAATTCCAGCTTTTCTGCCTG
CTTCCCCAGTTTCCCCAGCACCTCTCTGGAGGTATAGTACAACAGAGGGT
GCCATAGATGACTTGCTCATTGGTGGATTTATGAATCATGGCCACTATTT
TTTTAATGCGAGATAATTTTACATTAATTAATTTATTAAANGGGAGGGTT
TTTTTTTCCCCCCCCCCCNNAAGNNAGAACTTCCCCAAAAAAAAAAGGGG
GGATGGTTNACNTAAATAGCCTTCTATTCATGTCTATTTATCTAGTCGGC
CATCATTGGAAAGAGAGGCCCATTGCACACACATTCTTTATGACTAGAAG
GTTCCAAAAGCACAGTAGCCACTGGTGTTGACATCCTCCTGATCCATTAT
TTATAATAACCCAGCTTTCCAAAATAACCCCTCACTCTAAAGTACTTTCG
AGACTATCTGTAATCCCCTCAAGGCCAATTTGAAGATCCCCAACCCCAAA
TAAGTTAAGCCCTTTTATAACTGGTGCTTCCAAGTCCATTAAACTCCTCC
CTGGCCTATTTCCAAAATTTACTAGTTTTTTTTTTGTTGAAAATCCGGAA
TTCCAAGGGTATGGGTTGCTTCCTTTGTTACTAACCTGCAAATATTGCTG
GACCCCTATTTCCTGATCCTCTTTTAAGCATTAGTTTTAAAGTTGGCACA
TATGTTAACCATATTGGATTCTTTCCCTCGGACACCCTAAATTGCCCGGC
TGTTTTGTCCTCCCTAAAATACTTTCTCTATTTACGACTAAACGCGTCTC
GATGGCCCTCTTCTGGCGTCTCTTATTTTAACCCTGGTTTTTTTACTTTG
CGGTCCACCCCTTTTATCTTTTCTACAAAAATATCAAATCTTCCCTGTGG
TCTTTTTCTCATTATATATTATGGCCTTACTTTCTCTTTGTATTCCATAA
CGTCTATCCCCCTCTACTTTCAGTCTTCCTATTTTTATAGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_i23.g1 MSMg01no064_i23.g1 CHROMAT_FILE:
MSMg01no064_i23.g1 PHD_FILE: MSMg01no064_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:35 2005
         (114 letters)



>mm_chrX_85633172_85633685
          Length = 514

 Score =  182 bits (94), Expect = 6e-51
 Identities = 109/114 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaattcccagaatgtgggagatttcatgaaggctatttaatattaaataaaaccctc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 201 ctagaattcccagaatgtgggagatttcatgaatgctatttaatattaaataaaatcttc 260

                                                                 
Query: 61  tatcccctcccccccacccccctgttccccaacccacccattcccaatttcctg 114
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 261 tatcccctcccccccacccccctgctccccaacccacccactcccaatttcctg 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)