BAC Information

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BAC

Clone NameMSMg01-065I23
ChromosomeX (Build37)
Map Location 4,768,198 - 4,768,544
singlet/doubletsinglet
Overlap geneLOC100043935
Upstream geneLOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724
Downstream geneLOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751, Nudt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065I23.T7 (MSMg01no065_i23.b1)MSMg01-065I23.TJ (MSMg01no065_i23.g1)
ACCAG290741AG290742
length681679
length of high quality
(start - end)
347 (78 - 424)405 (69 - 473)
definitionCHROMAT_FILE: MSMg01no065_i23.b1 PHD_FILE: MSMg01no065_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:06 2005CHROMAT_FILE: MSMg01no065_i23.g1 PHD_FILE: MSMg01no065_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAACCTGACGAGAGCATAGTGAGAAATTGTTCAGGAGAATGCAG
GTTCTCTCAGAGGGAAACAAAGTGCTATGAATATGTGAGTGCAGCTTTGC
ACAGAGGCCATTGTGCCTGTGAGTTCATGTTCCTGCTGAGGACAGATTGC
AATGGAGACAAAAGTGTAGGTGCCTGCTGATGTCTCGAGTTGAGGATTAA
CCTGTTAGTGCAGGTGACTGCATGGGCCAGGGAAGGGACCTGGGCAAATA
AGTGCAGGAGCCTTCAGAAGACTATGTTATGTGGGGACAGTGGGCTATAC
ACAGACAAGCTGGTCTCCAGTTGAGTTGAGGTCTGAACTCTAGTAGAACC
TGATGGGTGGCAATTCCCACCTACATGGTACAGAAGGTGTTCCCTCATGT
CTTCTGGCCCCCTGGCTCCTGTTGAATTTACCCCACATACCCCACAAGAG
AGGATAGTGGCTAGCAGTCTTGTACACAATGTCCCAAGTTTCTGACCTTT
AGGCTAGACTTCTCCCAGTTACCTAGCATCTACTATATAACAAGTCCACT
ATAAGAGGGGCTGCTTGTCCCACTCCTCACTCTTTTAAGCTTTTACTTTC
TTTAATCTCTCTCTAAACCCTCTCCTCTCTA
ATGCAGTGGGAGGCCTGGCGGCGCCTGTTCAAAAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCACAGAGGAATCTCTACTACTGGAGAAGCA
CTTTTAAAAAAAATCAACATTCTTATTAGTCATCAGGAGAATGCAAATCA
AAACAACTCTGAGATTCCATCTTAACACCTATCAGAATGGCTAAGATCTA
AACTCAGGCGAGGATGTGGAGAAAGGGGAACATTCCTCCAGTGCTAGAGT
GGAAACTTGCACAACCACTTTGGAAATCAATTTGGTGGTTTCTTAGAAAA
TTGGGAATAGCTCTACCTCTAGACACAGCTGTACCACTCCTGGACATATA
CCCAAAGATCAAGTGTCCATAGTATGTGGATTTATTTCTGTGACTTTGAT
TCTATTCTGTTGATCAATCTGTCTATATTTATGTCAATATCTTGTGATTT
TTATTACTATTGCTCTGAAGTATAGCTTACAATCAGGGATAGGGATACCA
CCAGAAATTATTTAATTTATACAGGATTGTTTTAGCTACCCTGGGTTTTT
TGGTTTTCTATATGCTTTAAATCATGATCCCTTTCAAGGTCTGCCACGAA
TTGCGTTGGAATTTTGATGTGAATTGCATTGAAACCGATATTCCATTTTG
ACAAACGGCCACTTTTTTTTTAGTTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_i23.b1 MSMg01no065_i23.b1 CHROMAT_FILE:
MSMg01no065_i23.b1 PHD_FILE: MSMg01no065_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:06 2005
         (347 letters)



>mm_chrX_4767998_4768744
          Length = 747

 Score =  605 bits (313), Expect = e-177
 Identities = 340/349 (97%), Gaps = 4/349 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaattgttcaggagaatgcaggttctctcagagggaaacaaagtgctatgaatatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaattgttcaggagaatgcaggttctctcagagggaaacaaagtgctatgaatatgtg 260

                                                                       
Query: 61  agtgcagctttgcacagaggccattgtgcctgtgagttcatgttcctgctgaggacagat 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgcagctttgcacagaggccattgtgcctgtgagttcatgttcctgctgaggacagat 320

                                                                       
Query: 121 tgcaatggagacaa-aagtgtaggtgcctgctgatgtctcgagttgaggattaacctgtt 179
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaatggaga-aagaagtgtaggtgcctgctgatgtctcgagttgaggattaacctgtt 379

                                                                       
Query: 180 agtgcaggtgactgcatgggccagggaagggacctgggcaaataagtgcaggagccttca 239
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtgcaggtgactgcaggggccagggaagggacctgggcaaataagtgcaggagccttca 439

                                                                       
Query: 240 gaagactatg-ttatgtggggacagtgggctatacacagacaagctggtctccagttgag 298
           ||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 440 gaagact-tggttatgtggggacattgggctaaacacagacaagctggtctccagttgag 498

                                                            
Query: 299 ttgaggtctgaactctagtagaacctgatgggtggcaattcccacctac 347
           |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 499 ttgaggtctgaactctagtagaacttgatgggtggcaattcccacctac 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)