BAC Information

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BAC

Clone NameMSMg01-065M18
ChromosomeX (Build37)
Map Location 83,985,095 - 83,985,287
singlet/doubletsinglet
Overlap genenone
Upstream geneGyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893, LOC667841, LOC236427, EG667852, EG436212, Gm41, EG629374, EG637027
Downstream geneIl1rapl1, LOC667876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065M18.T7 (MSMg01no065_m18.b1)MSMg01-065M18.TJ (MSMg01no065_m18.g1)
ACCAG290921AG290922
length684684
length of high quality
(start - end)
197 (80 - 276)120 (146 - 265)
definitionCHROMAT_FILE: MSMg01no065_m18.b1 PHD_FILE: MSMg01no065_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:24 2005CHROMAT_FILE: MSMg01no065_m18.g1 PHD_FILE: MSMg01no065_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAACCG
CGGAATTCATTCTGTTGCCCAGGATGGGCTCAATCTCAGAGACCCTCCTG
CCTCTGCCTCCCTGGGCCACCACTCCGGAGCTCTCAGTAGGATTTTTAAA
TGTGAGAAAATAACTTCTACTGGAAGGGTAAAATCCCATCAGGATTATTT
GGCATTGTCTAACTTTAATAGCATATGTTAAATCACAAATTCCAGAATAT
AATGTTTAATTCAAAATATCAGGTGAATAGTTAAAGAATCTGGGGGGATA
CTTATGTACTTCAAAAACATACATACATTTTCTATTATACTCATCTTATT
GACAGGGTTTAAAAGATTAAGAAAAAGAGAGAGAGAACACTATACTTATA
GAAAAGCCTGAAGACAAATTAAATACTATACGAAAAAAATTAACGAAGAT
AAAGAATAAAACGGATATTGAGAAAAGTAAGATAGCAGGAAAAAAGGCAA
TTATAAGTATAAGGTGGACGGTATTATGACTTAGGCTCTGAGAAGCAATG
TCAGCGAGTTACCGAGGATATCCGATTGTCTACAGCACGAGGGAAAACTC
AGAATTTGTCACAGCGGAAAATTGTCAAGACACGGGTCCGGAAGAGAGGA
GGACGGTAGCGATGTAGGCATTACGTTATGGCGC
GCCGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATGAACAAGCTTCA
GTGAATTAGCTGGATATAAAATTAACTCAAACAAGTCAATAGGGCTTTCT
CTACACAGAGGATAAACAGGATGAGAGAGAAATTAGGGAAACAACACCCT
TCTGGATAGTCACAAATAATATAGAATACCTTGACATGACTCTAACTAAG
GAAGTGAAAGATCTGGATGCTGGGAACTTCAAGTCTCTGAAGAAAGAAGT
TAAAGAAGATCTCAGAAGATGGAAAGATCTCCCAAGCTCACGGAAGGGGG
GGATCGATATAGGAAAAGAGGCTATCCTGCCAAAAGAAATCAACAGAGTC
AGAGCAATCCCTATCAGGATTCCGGGTCAAATCAACAAGGGGGGAAAAAG
AAAGAGCGGGGGAGTGCAAACTCGGGGGGGGGAGGGCTACAATAGTAAAA
ACTCTCCTCAAGGATGGAAGAAACTCAGGGGGGAACACAGTGGCGAACCA
AGAGAAATACGAACAAAGGAACAAAGGGGAAAAAAAAATAAGGGGGGAGG
AGGGCTGCACAGAAGTACACCAATGGGATAGAATTGAAGAGGGGGGGAAA
AGGGGGGACAAAGGAAGGGGATAAAAAATTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_m18.b1 MSMg01no065_m18.b1 CHROMAT_FILE:
MSMg01no065_m18.b1 PHD_FILE: MSMg01no065_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:24 2005
         (197 letters)



>mm_chrX_83984895_83985491
          Length = 597

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaatctcagagaccctcctgcctctgcctccctgggccaccactccggagctctcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 393 tcaatctcagagaccctcctgcctctgcctccctgggccaccactcccgagctctcagta 334

                                                                       
Query: 61  ggatttttaaatgtgagaaaataacttctactggaagggtaaaatcccatcaggattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggatttttaaatgtgagaaaataacttctactggaagggtaaaatcccatcaggattatt 274

                                                                       
Query: 121 tggcattgtctaactttaatagcatatgttaaatcacaaattccagaatataatgtttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tggcattgtctaactttaatagcatatgttaaatcacaaattccagaatataatgtttaa 214

                        
Query: 181 ttcaaaatatcag 193
           |||||||||||||
Sbjct: 213 ttcaaaatatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)