BAC Information

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BAC

Clone NameMSMg01-066A18
ChromosomeX (Build37)
Map Location 38,804,600 - 38,805,086
singlet/doubletsinglet
Overlap geneGria3
Upstream geneLOC385344
Downstream geneLOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066A18.T7 (MSMg01no066_a18.b1)MSMg01-066A18.TJ (MSMg01no066_a18.g1)
ACCAG291113AG291114
length7001,749
length of high quality
(start - end)
626 (40 - 665)---
definitionCHROMAT_FILE: MSMg01no066_a18.b1 PHD_FILE: MSMg01no066_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:43 2005CHROMAT_FILE: MSMg01no066_a18.g1 PHD_FILE: MSMg01no066_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTCCTTTGCGTTTAGCTTTTACCTCTAAGATTAGGTGCTTTCACAGGAAG
AACTTCATTGCCTTTGTGCGTGAAACAAAAAGAAGTGTTTAAACCTAGAA
GGGAAGTCTCTGATGGAAAGTGACTATAAGTGAACAGCTGCTAGCCTTTT
TTCCTGCTGTTTTATTTTCTTTGCCAATCAAATCAGCAGCTCAAAGTTTT
GTTTGGGCCCCAGCTGGACCATAGAACTGGGAGCTGCAGAATGTGTCATA
GTCATCTTTGTATCCTCAGCAGCCAACTCAGTGCCAGGTTCAGAGTAGGT
GTTCAAAATGTCTACATAATTAAATAAAGTGACAGCTGGGAGGCCCTGCA
CATAGGTTGAGTAGGCAATTTTCTCATATTTTTGTTATTTTTATAATTTA
TACCCAGTTAACTTGCTAGAATGATCTGAAGCAAAACTGCCCACATGGTA
TGGTTTAAGGACTACTAAAATGCTCCTATATGACCATGAATAGCTCCCAT
GCCAGCCTACTCAGGTTCCAGAAATTTCTATGATACTGAATTATGTTGGC
ACAGAGGGCTCATTAAATGAAAATATTACATCTAGATGCTCTAGGATTAG
TGATCATTACTACCTAAAAATGAACTAGGTTTTGCATTATGTAAGGCCAN

TCCTCTATTTTTTCTCTTTCTCCCTCTCACTCTCNCTNNCTCTTCTCTCT
GCTACGCATACCCGCGCCGCCCGCGGANAGTCNCCGTGCCTCTCTGGCTC
GCGCCCTGACTGGCGACGAGTCTCTGTGCCTCGACAAACATACGCGCTCA
GCTCACTGCGGTGTGTTGTCTCTCTGATTCGCTGCGTAATGTGTGTTGCC
TTGTCTGGCGTTCGTCACCTTATTTGATATTGTTGTCTCATCTATATATC
TCGCTCCCGCTGTTTTTNCTTCTCTCCTCTGTGCTGTATCATATATTCAT
CTCACGCACCTACGTTATATGCTCTAGCATACGATGTGTCGATGATGACA
CGTGTAGCATATATTCGATTGCTGCGTGCGACGAGTCCTGCTGGCGCGCT
GTATTGCGGGTGCGGCGCTGTGTTTATGTATTAATAATTATCTCGCGCGC
GGCAGTACTACCGCCGNCGGCGACTAATACGTCACCGCGCCAGTCGAANT
ATATTATACTGCATAACAGTGTATCATACGCCTCTCTAGAGACGATGTAA
ACGCCGATATATTGATTGCGCGCGCTACTATATTCATGATCGCACGGCGC
GCGACGTATATAATTATCTAGCACAACTTAGTGTATCACGGCGGCGCAAA
GATATATCACCGTCGTCATATTATCACNANGNCGCGATATCTTATGATGC
TGGGCGCGGCGACATGAATACTGNGCACACANCACCGTACTACGAGTGAA
CAGCGACGACAAGACAGAAATAGAAGCATCGTAACACTGNCTCGCGTATA
GTCTCGACACTNATGTATAGAGACGNCGAGCGCATGAGAAANCNGATTGA
TAGCTGAGCAGACGTGTATCACAGACTAAATAGCCGGTATACGTCAATGA
TATACGNACACAAGATGNCAGCATAGCGTCGCGAATATATATCCGCTCTG
CGCATATACACGTCTATACATCGCAAAAATAACGCATATATCTCCCTCGC
CAGTGATATCGTATATACACGACTCATTAATAGCATGACAGTTATATACG
CACTCACGATATATCGCGACACACGACACATACTTATATAACGCCGACAC
GAATACNACTATCATTCACGCATGGCACCAATACTGANCTATATATCTGC
ACACAAATACCACATACACATACTCTAAAATACGCATTATCCACACACTA
ATACGCACGCATTATATCATCGAGCAGTTCGCACGTACGTAATTACGTTG
CAAATATGACATAACGCGAAACAACTGTACGTCTCTACTAAATGGACACG
CGAGACGTGCTATTATGCGTGCGAGAGTATGTGCTGGACCGCATGCTAAT
GACACAATACGTTAGATACGATGTCCGCTTGACGTAGCACTCGCGCGACG
TGTGATACAAATAACNTCTCAGTCTGCAGACGACATGATAAATCANTCGT
CACTAATNAATAACACGATACACACGATAATATATCAACACACGCCAGCG
CTATATTATATAAGATCGCACGACACATATATAAACATGTAGCAGTAATA
GTGCGGCATCTCATNGAGCATATATAGTCATGAATATGTGCTGACGAACC
ATACTACATTCNTACGAGACACACCCACCTCACACACATATATGATANGT
ATCATATCATATCATCTACACACATATCGACGTNTACTACANACACGGCG
ACGNCGTGACACGACTACATCAGTACTCTATATCATATATTGTCCGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_a18.b1 MSMg01no066_a18.b1 CHROMAT_FILE:
MSMg01no066_a18.b1 PHD_FILE: MSMg01no066_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:43 2005
         (626 letters)



>mm_chrX_38804061_38805086
          Length = 1026

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Minus

                                                                        
Query: 140  agtgaacagctgctagccttttttcctgctgttttattttctttgccaatcaaatcagca 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 agtgaacagctgctagccttttttcctgctgttttattttctttgccaatcaaatcagca 967

                                                                        
Query: 200  gctcaaagttttgtttgggccccagctggaccatagaactgggagctgcagaatgtgtca 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  gctcaaagttttgtttgggccccagctggaccatagaactgggagctgcagaatgtgtca 907

                                                                        
Query: 260  tagtcatctttgtatcctcagcagccaactcagtgccaggttcagagtaggtgttcaaaa 319
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  tagtcatctttgtatccacagcagccaactcagtgccaggttcagagtaggtgttcaaaa 847

                                                                        
Query: 320  tgtctacataattaaataaagtgacagctgggaggccctgcacataggttgagtaggcaa 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  tgtctacataattaaataaagtgacagctgggaggccctgcacataggttgagtaggcaa 787

                                                                        
Query: 380  ttttctcatatttttgttatttttataatttatacccagttaacttgctagaatgatctg 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  ttttctcatatttttgttatttttataatttatacccagttaacttgctagaatgatctg 727

                                                                        
Query: 440  aagcaaaactgcccacatggtatggtttaaggactactaaaatgctcctatatgaccatg 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  aagcaaaactgcccacatggtatggtttaaggactactaaaatgctcctatatgaccatg 667

                                                                        
Query: 500  aatagctcccatgccagcctactcaggttccagaaatttctatgatactgaattatgttg 559
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 666  aatagctcccatgccagcctactcaggttccagaaatttctatgaaactgaattatgttg 607

                                                                        
Query: 560  gcacagagggctcattaaatgaaaatattacatctagatgctctaggattagtgatcatt 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  gcacagagggctcattaaatgaaaatattacatctagatgctctaggattagtgatcatt 547

                   
Query: 620  actacct 626
            |||||||
Sbjct: 546  actacct 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)