TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTATTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTAGTTCTCTGG
AGTTTAACTTCTTGAGTTCCTTGTATATATTGGATTGTAGCCCTCTTTCA
GATGTAGGATTCATAAAGATCTTTTCTCAATCTGTTGATTGCCATTTTGT
CCTAGTGAGAGTGTCCTTTGCCCTACAGAAACTTTGCAATTTTATGAGGG
CCCATTTGTCAATTGTTGATCTTAGAGCATAAGCTATTGGTGTTCTCTTC
ATTAAATTTGTCCCTGTTTCATTGTGCTCAAGCCTCTTCTCCACTTTCTT
TTCTATTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGACCCACT
TGGACTTGAGCTTTGTACAAGCAGATAAAAATGGATCAATTTGCATTCTT
CTACATGAATCAGCACCATGTGTTGAAAATGCTGTCTTTTTTCTAATGTA
TGGTTTTAGCTCCTTTCTCAAAGATCAAGTTATCATAGGTGTGTGGGTTG
ATTTCTGGGTCTTCAATTCTATTTCATTGATCTACCTGTCTGTCATTGTA
CCAGTACCATGGAGTTTTTATCACAATTGCTCTGTAGTACAGCTTAATGT
CAGGCATGGTGATTCCACCGGAAGTTCTCTTATTGTTGAGAATAGTTT

NCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGTTAAAGAATACAGAGCCA
TAGATAGAAGATTATATGACTCTAAGATATTTGCTGAGTTTTCTATTAGT
TTCCAATTATACAACTCTATTACTCGAAGAAGAATTAGAATGTAAGAACA
AAATAAAATAATGATGGCCTAAGTTAATAGAAATATAGCTAAAATATTTT
ACAAAAAAATGATAAAGGCATTTACTATGCATGTTCTTTACAATAATAAT
ATTTATTTGGAAGAGATTCGTATTAAAGATGTTAGCCAAGGAAAGTAAGA
CTATCTAAATATCTAATGGAGTATTTTAAGTTTAGCAAGCTACAATGGAG
CAGTGCATGGCACTAGGAAAAAAGTGATAATCAATAATCTAATATAAAAT
ATGGTTTGTCTAGACGAGTGATTCCCAACTGTGGATCAAAATCATTTTTA
GGGTCACTTATAAGCATTGAAAAATAGAGATATTTACATTATAATTTATA
ACAGCAATTAAAACTACAATTATGAAGTAGAAACAAAAATGGTTTGGAGT
CACTATAACATGAAGAATTGTATTAAAGTTTTGGAGGATTAGGAAGGTTG
AGAACCACTGGTCCAGAGTGTAAGAGTAATTGGAATTGAGTCATTATAAA
GCG

Query= MSMg01no066_k04.g1 MSMg01no066_k04.g1 CHROMAT_FILE:
MSMg01no066_k04.g1 PHD_FILE: MSMg01no066_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:29 2005
         (576 letters)



>mm_chrX_78739464_78740442
          Length = 979

 Score = 1089 bits (563), Expect = 0.0
 Identities = 574/579 (99%), Gaps = 3/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgttaaagaatacagagccatagatagaagattatatgactctaagatatttgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tctgtgttaaagaatacagagccatagatagaagattatatgactctaagatatttgctg 568

                                                                       
Query: 61  agttttctattagtttccaattatacaactctattactcgaagaagaattagaatgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agttttctattagtttccaattatacaactctattactcgaagaagaattagaatgtaag 508

                                                                       
Query: 121 aacaaaataaaataatgatggcctaagttaatagaaatatagctaaaatattttacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aacaaaataaaataatgatggcctaagttaatagaaatatagctaaaatattttacaaaa 448

                                                                       
Query: 181 aaatgataaaggcatttactatgcatgttctttacaataataatatttatttggaagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaatgataaaggcatttactatgcatgttctttacaataataatatttatttggaagaga 388

                                                                       
Query: 241 ttcgtattaaagatgttagccaaggaa---agtaagactatctaaatatctaatggagta 297
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 387 ttcgtattaaagatgttagccaaggaaagtagtaagactatctaaatatctaatggagta 328

                                                                       
Query: 298 ttttaagtttagcaagctacaatggagcagtgcatggcactaggaaaaaagtgataatca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttttaagtttagcaagctacaatggagcagtgcatggcactaggaaaaaagtgataatca 268

                                                                       
Query: 358 ataatctaatataaaatatggtttgtctagacgagtgattcccaactgtggatcaaaatc 417
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ataatctaagatgaaatatggtttgtctagacgagtgattcccaactgtggatcaaaatc 208

                                                                       
Query: 418 atttttagggtcacttataagcattgaaaaatagagatatttacattataatttataaca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atttttagggtcacttataagcattgaaaaatagagatatttacattataatttataaca 148

                                                                       
Query: 478 gcaattaaaactacaattatgaagtagaaacaaaaatggtttggagtcactataacatga 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gcaattaaaactacaattatgaagtagaaacaaaaatggtttggagtcactataacatga 88

                                                  
Query: 538 agaattgtattaaagttttggaggattaggaaggttgag 576
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 87  agaattgtattaaagttttggaggattaggaaggttgag 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 979
Length adjustment: 10
Effective length of query: 566
Effective length of database: 969
Effective search space:   548454
Effective search space used:   548454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)