BAC Information

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BAC

Clone NameMSMg01-067F24
ChromosomeX (Build37)
Map Location 36,337,480 - 36,337,746
singlet/doubletsinglet
Overlap geneLOC670539
Upstream gene4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171
Downstream geneLOC100039700, 1700085A12Rik, LOC100039715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067F24.T7 (MSMg01no067_f24.b1)MSMg01-067F24.TJ (MSMg01no067_f24.g1)
ACCAG292125AG292126
length673685
length of high quality
(start - end)
272 (42 - 313)258 (77 - 334)
definitionCHROMAT_FILE: MSMg01no067_f24.b1 PHD_FILE: MSMg01no067_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:27 2005CHROMAT_FILE: MSMg01no067_f24.g1 PHD_FILE: MSMg01no067_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAGCGAAATGGTGAATGAAAATTTGGAACTGAGTGGTTGGTATGGGCCC
AGAAGAAGCTAGCCCCAGAGGATGGACCAGGGAGGCACAGCTCACATGAT
AGAAGTCTGTGAGTATCACAGCAGTGGCAATGATGGCCTGCGACAGCAGT
GGAAATCCATGTGGTGGATGATGGCAGGTGCCAGCAGACTGAGTCCACGT
GGTGTAGCAGTGGCTGCAGGTAATGATGGCAGTGGCGGCTGTCCATGTGG
CATTGATTCTCCTTTTGCAGTGGCAGCTTCAGAGCCAAGTGGATTCTGGG
AATATGTTTTTTATTGCCCCCCCCCCCCGCGTTTGGGTCCTGTCTAAGTG
ATTTCATGGTTTTCACACAAACAGATACAAACACTTATGAGGGGCGTTTG
ATGAATATATACTATCAAAAACCTGAAGGAATAGCATTGTTAGATTTTTT
TAGACATAATATTTAATCTCAGCGGCGGCGGTTCATGCCTTTTAATCCCA
TTCCTTGTTATGCTCAGGCTTTTTGTTTTCTGATTTTCGGGCCTGCCTGT
TCTATTACGGGTGTCTCTTCCACTTTTCGTTCTATATTAGCCACCCTGTT
NTTCTCCCTACTTTTCTTTCTCT
TTCGATGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCAT
GAATGGGTGTTGAATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGTTG
GATTTTTGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTG
GTCAGTATGGATGATTGCTTTAATATGTTCTTGGATTCAGTTAGCAAGAA
TTTTATTGAGGATTTTTGCTTCTATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTTTATCCCTCCCGCCCCCACGTATCAGGGTAATAGT
GGNTTCATAAAATGAGTTGCCCCAAAAAAAATATACTTCTATTGTGGGAG
GGAGTTTGTGCTGAACTGTAANTATATCTTCTTTGAAGGTTTGATATATT
TCTGCTTTTCATTTGCTTGTCCTTGTGATTCTTTTTGTATGGCTGTCTTT
TTTCTATTGTTTTTATGTTCTTCAGTTGATTTTTGAACTGATCAATTTGG
TCACAATTGTATCTTTTGTCATTCTTTGTCTCTCTTTTATTAGTTTATAT
ATATTTGTTATTTTTTGCTGTGTTACTTATTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_f24.b1 MSMg01no067_f24.b1 CHROMAT_FILE:
MSMg01no067_f24.b1 PHD_FILE: MSMg01no067_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:27 2005
         (272 letters)



>mm_chrX_36337276_36337947
          Length = 672

 Score =  501 bits (259), Expect = e-146
 Identities = 265/267 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagcgaaatggtgaatgaaaatttggaactgagtggttggtatgggcccagaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctagcgaaatggtgaatgaaaatttggaactgagtggttggtgtgggcccagaag 264

                                                                       
Query: 65  aagctagccccagaggatggaccagggaggcacagctcacatgatagaagtctgtgagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagctagccccagaggatggaccagggaggcacagctcacatgatagaagtctgtgagta 324

                                                                       
Query: 125 tcacagcagtggcaatgatggcctgcgacagcagtggaaatccatgtggtggatgatggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcacagcagtggcaatgatggcctgcgacagcagtggaaatccatgtggtggatgatggc 384

                                                                       
Query: 185 aggtgccagcagactgagtccacgtggtgtagcagtggctgcaggtaatgatggcagtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 aggtgccagcagactgagtccacgtggtgtagcagtggctgcaggcaatgatggcagtgg 444

                                      
Query: 245 cggctgtccatgtggcattgattctcc 271
           |||||||||||||||||||||||||||
Sbjct: 445 cggctgtccatgtggcattgattctcc 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)