BAC Information

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BAC

Clone NameMSMg01-068C23
ChromosomeX (Build37)
Map Location 13,278,551 - 13,278,868
singlet/doubletsinglet
Overlap geneCask
Upstream geneCrsp2, LOC668987, LOC245350, Ppia-psx_132.1, Usp9x, LOC100043000, LOC100043002, LOC675380, Ddx3x, LOC385326, LOC634019, LOC668990, LOC100043947, LOC100043948, Nyx, LOC675416, Gpr34, Gpr82
Downstream geneLOC385327, EG385328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C23.T7 (MSMg01no068_c23.b1)MSMg01-068C23.TJ (MSMg01no068_c23.g1)
ACCAG292738AG292739
length703698
length of high quality
(start - end)
323 (46 - 368)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no068_c23.b1 PHD_FILE: MSMg01no068_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:31 2005CHROMAT_FILE: MSMg01no068_c23.g1 PHD_FILE: MSMg01no068_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAAATTGGCAAAAAACTAAAACAAACAAACAATCAACAAACAA
ACAAACAAAAAACCAAAACCCCAAAAAACTCCCAAAAATCCTAAAGAAAC
TGAATGGAAGAGAAACTAGTAAACATGCTTTAAAAGCATTTTATAGCACT
AATGGCAAAATAAATGGCAATTAACCCATAACATCACTTGACATCAAAAT
GTGCACAAGGGAGCTGTTCATAAAGTACTTGTCAAATTTGGACCTGAGTT
TCTTTTCCCAGCATCTACTTAAAACCCAGGCACAGTGGTGTGTGCCTACA
ATACTAGAACTGACTGTTTTTATATACCCCCCCCCCCGGGGTTTATATGC
CAGCTAGTCTACCCAATCAGCAAGCTCGAGTGACATATAAAACTCCTTGT
CTCAAAAATATAGTAGAGAGCACCTATGCAAGACATTGGACATCGACCTC
TGGCCTCCATTCATACTACCGTACACACGCACAAAGTAAATACGGATCTG
CTCATCTCTCATTATTGTGGATACAAACGTAAATATTTATGGAAAGTAAT
GTGAGCCTACATAGAGATCTTGCTGTGTGTTGTAAGTAATTAGCCAATCA
CCAGATCTGATCCCTGACTCAATATCTAGGTATCCCCAAAAGTCTAAGTC
TTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTCATAACTTTTCCTGTGACCTA
CACACACAGGCCATGGCACACAGGCATACGAACACATGCATGCACTCAAA
CACACAAGTGCACACACAGATAAACAAACAATCAGTCAGGAGTGATTGCA
TACAAAATAAATACATGTAATTTAAATTTTTTAAATTTCATATTTATTTT
TATTTTATGTGCATTGGTGCTTTGCCTGCATATGTGTCTGTGTGAGGATG
TCAGATATTCAAGTTAGAGACAGTTGTGAGTTGCCATGTGGGGCTGGGTA
TTGAACTCAAGTCCTCTGTTATAACACCCCACCGCCCTGAACTGCTGAGC
CATAAAAACAAATGTAATATAAATTTAAAACTTTAAACACATAGCTTTTT
CTTTACCCTTTCTATCTCTTCTTTGGACACCAAACAAAATCTTAAGCATG
CTTGCCCCACACTCTGGGCAACTCTTACTGTTTCTCTTAATCCCACCTCT
CCCACCCCCTCTTCATACTGCTTCTGGGAGACCCCTGTTGTTGACCTTGG
TTTCAAAGGCATAGCTTGCTCTCTTCTGCTTCTCCATCTCCCTCCTCTTG
GCATTTGCTGAGATTTACAACTTTGCCTGCTCCATGGTTTTTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c23.b1 MSMg01no068_c23.b1 CHROMAT_FILE:
MSMg01no068_c23.b1 PHD_FILE: MSMg01no068_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:31 2005
         (323 letters)



>mm_chrX_13278348_13279070
          Length = 723

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttaaattggcaaaaaactaaaacaaacaaacaatcaacaaacaaacaaacaa 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattctttaaattggcaaaaaactaaaacaaacaaacaaacaacaaacaaacaaacaa 263

                                                                       
Query: 64  aaaaccaaaaccccaaaaaactcccaaaaatcctaaagaaactgaatggaagagaaacta 123
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 aaaaccaaaacccaaaaaaactcccaaaaaccctaaagaaactgaatggaagagaaacta 323

                                                                       
Query: 124 gtaaacatgctttaaaagcattttatagcactaatggcaaaataaatggcaattaaccca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtaaacatgctttaaaagcattttatagcactaatggcaaaataaatggcaattaaccca 383

                                                                       
Query: 184 taacatcacttgacatcaaaatgtgcacaagggagctgttcataaagtacttgtcaaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taacatcacttgacatcaaaatgtgcacaagggagctgttcataaagtacttgtcaaatt 443

                                                                       
Query: 244 tggacctgagtttcttttcccagcatctacttaaaacccaggcacagtggtgtgtgccta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 tggacctgagtttcttttcccagcatctacttaaaacccaggcacagtggtatgtgccta 503

                             
Query: 304 caatactagaactgactg 321
           ||||||||||||||||||
Sbjct: 504 caatactagaactgactg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)