BAC Information

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BAC

Clone NameMSMg01-068P07
ChromosomeX (Build37)
Map Location 68,827,304 - 68,914,966
singlet/doubletdoublet
Overlap geneLOC100040549
Upstream geneLOC100040432, EG280121, LOC666993, Ppia-psx_466.1, EG628080, G630014P10Rik, LOC667013, Mtm1, Mtmr1, Cd99l2, LOC667017, Hmgb3
Downstream geneGpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P07.T7 (MSMg01no068_p07.b1)MSMg01-068P07.TJ (MSMg01no068_p07.g1)
ACCAG293329AG293330
length696703
length of high quality
(start - end)		631 (39 - 669)590 (76 - 665)
definitionCHROMAT_FILE: MSMg01no068_p07.b1 PHD_FILE: MSMg01no068_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:34 2005CHROMAT_FILE: MSMg01no068_p07.g1 PHD_FILE: MSMg01no068_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,827,304 - 68,827,927)(68,914,377 - 68,914,966)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTA
CATCTTCTTCTGAAGGCTGCTAGGAGAATACTGACTTCCAGGCAGCTAAG
ATGAGGCTCTTATAGCCCACACCCACAGTGACTTACCCACTCCAACAAGG
CCACACCTTCTAATCATGCTATTCCCTGAGTCGAGCATATACAAACCACC
ACAATACCTGACCACAAAGATAACTTGGTCAGTGAATCATCACACCCCAG
GCAGGTTTGGAGACACCTGACACTAAGGCACATAGAGAGGAACTGAAAAG
CACTGGGCAGCACCCAGAGTTAATTGGCATATACCTCAGTGAGAACATCT
GGGGGCCTTGAGCCATAGTTGGGGTGTTGAATGTCTGAAGCTGTAATGAT
GAGCCCAGAAAAGGCCAACAGGATATCTAAGTAACCTGTGAAATTGTGAG
ACATATTAGACTGTTTTAAATTTTCTTTTAATCTTGATATCAGTTCTCAC
CATGTAGACCAGGCTGGCCCTAAACTTCTGATCCTCCTACCTCAATCTCC
CCGTTGCTGAGAGTATAGACTTGCAATACCAATCACAATGATTATATCTG
TGTTATTTTAAGGCACTAAAGTCTGTGGCATCTCATTCACTTTTGTAGGA
ACCTTTAACAGCCAGTGTTCAATAGACAAATGCTTAACGAAATTAT

NTCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAAACAGAATAGAATGGAAGAAA
AATGGAAAGCAGCTATGTAGGGGCTGCAGACACTACTCTCTTCCTTCTGG
AAGGTTGTTGCGGGCTGTCAGGCAATTATGCTCCAGTCTGAGGATTATGG
AGCTGAAGTAGCACTGAAGCTGGCAGTCCCTGAGTCCCTGACGCTGGAAG
CTAGCCTTGAAAGCGGGCTGGAAATTTTAGAGACTGAGGAGTGAGCAGGA
GAGCAAGCCTGGCCCCTGACCACTGACTGTTTGGACAATATTTGACCATG
ACTTCCTGGTGCTTTGATTTTCAACACCAACAGACAAATATTTTAATAAT
CGCGGGAGAAATAATTGTTTCTACTTGAATTAATTGTTATCTTTATGAAC
TAGCTAAATACAGACTCAGATCACGTCAATAGTAAGGAAAAGGCATGGCT
ATCAAAGCTGTCGTATGAACACAGGAGGGAGAGAGCTGGGGGCCTGTTTG
CAGGGGTAAGTAGAACAAATCTCATGTACAATACATTTAATGGCTTTGGA
GCATTTAAATTGTGACTCCTTTGTGAGGTACAGTGCAAAGTGTATGATTT
TTAGACTCTAACAGCATTTTTCAAAGTATGTAAAGCCTGCTTAGAAGTCT
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p07.b1 MSMg01no068_p07.b1 CHROMAT_FILE:
MSMg01no068_p07.b1 PHD_FILE: MSMg01no068_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:34 2005
         (631 letters)



>mm_chrX_68827097_68828127
          Length = 1031

 Score = 1168 bits (604), Expect = 0.0
 Identities = 619/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctacatcttcttctgaaggctgctaggagaatactgacttccaggcagctaagatgag 67
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctacatcttcatctgaaggctgctaggagaatactgacttccaggcagctaagatgag 267

                                                                       
Query: 68  gctcttatagcccacacccacagtgacttacccactccaacaaggccacaccttctaatc 127
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 268 gctcttatagcccacacccacagtgacacacccactccaacaaggccacaccttctaatc 327

                                                                       
Query: 128 atgctattccctgagtcgagcatatacaaaccaccacaatacctgaccacaaagataact 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atgctattccctgagtcgagcatatacaaaccaccacaatacctgaccacaaagataact 387

                                                                       
Query: 188 tggtcagtgaatcatcacaccccaggcaggtttggagacacctgacactaaggcacatag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tggtcagtgaatcatcacaccccaggcaggtttggagacacctgacactaaggcacatag 447

                                                                       
Query: 248 agaggaactgaaaagcactgggcagcacccagagttaattggcatatacctcagtgagaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agaggaactgaaaagcactgggcagcacccagagttaattggcatatacctcagtgagaa 507

                                                                       
Query: 308 catctgggggccttgagccatagttggggtgttgaatgtctgaagctgtaatgatgagcc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 catctgggggccttgagccatagttggggtgttgaatgtctgaagctgtaatgatgagcc 567

                                                                       
Query: 368 cagaaaaggccaacaggatatctaagtaacctgtgaaattgtgagacatattagactgtt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cagaaaaggccaacaggatatctaagtaacctgtgaaattgtgagacatattagactgtt 627

                                                                       
Query: 428 ttaaattttcttttaatcttgatatcagttctcaccatgtagaccaggctggccctaaac 487
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttaagttttcttttaatcttgatatcagttctcaccatgtagaccaggctggccctaaac 687

                                                                       
Query: 488 ttctgatcctcctacctcaatctccccgttgctgagagtatagacttgcaataccaatca 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttctgatcctcctacctcaatctccccgttgctgagagtatagacttgcaataccaatca 747

                                                                       
Query: 548 caatgattatatctgtgttattttaaggcactaaagtctgtggcatctcattcacttttg 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 caatgattatatctgtgttattttaaggcactaaagtctgtggcatctcattcacttttg 807

                                   
Query: 608 taggaacctttaacagccagtgtt 631
           |||||| |||||||||||||||||
Sbjct: 808 taggaagctttaacagccagtgtt 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no068_p07.g1 MSMg01no068_p07.g1 CHROMAT_FILE:
MSMg01no068_p07.g1 PHD_FILE: MSMg01no068_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:34 2005
         (590 letters)



>mm_chrX_68914177_68915166
          Length = 990

 Score = 1125 bits (582), Expect = 0.0
 Identities = 588/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaacagaatagaatggaagaaaaatggaaagcagctatgtaggggctgcagacacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 attaaacagaatagaatggaagaaaaatggaaagcagctatgtaggggctgcagacacta 731

                                                                       
Query: 61  ctctcttccttctggaaggttgttgcgggctgtcaggcaattatgctccagtctgaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctctcttccttctggaaggttgttgcgggctgtcaggcaattatgctccagtctgaggat 671

                                                                       
Query: 121 tatggagctgaagtagcactgaagctggcagtccctgagtccctgacgctggaagctagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tatggagctgaagtagcactgaagctggcagtccctgagtccctgacgctggaagctagc 611

                                                                       
Query: 181 cttgaaagcgggctggaaattttagagactgaggagtgagcaggagagcaagcctggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cttgaaagcgggctggaaattttagagactgaggagtgagcaggagagcaagcctggccc 551

                                                                       
Query: 241 ctgaccactgactgtttggacaatatttgaccatgacttcctggtgctttgattttcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctgaccactgactgtttggacaatatttgaccatgacttcctggtgctttgattttcaac 491

                                                                       
Query: 301 accaacagacaaatattttaataatcgcgggagaaataattgtttctacttgaattaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 accaacagacaaatattttaataatcgcgggagaaataattgtttctacttgaattaatt 431

                                                                       
Query: 361 gttatctttatgaactagctaaatacagactcagatcacgtcaatagtaaggaaaaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gttatctttatgaactagctaaatacagactcagatcacgtcaatagtaaggaaaaggca 371

                                                                       
Query: 421 tggctatcaaagctgtcgtatgaacacaggagggagagagctgggggcctgtttgcaggg 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 370 tggctatcaaagctgtcgtatgaacacaggagggagagagctggggacctgtttgcaggg 311

                                                                       
Query: 481 gtaagtagaacaaatctcatgtacaatacatttaatggctttggagcatttaaattgtga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtaagtagaacaaatctcatgtacaatacatttaatggctttggagcatttaaattgtga 251

                                                             
Query: 541 ctcctttgtgaggtacagtgcaaagtgtatgatttttagactctaacagc 590
           ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctcatttgtgaggtacagtgcaaagtgtatgatttttagactctaacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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