BAC Information

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BAC

Clone NameMSMg01-069I12
ChromosomeX (Build37)
Map Location 60,658,192 - 60,658,393
singlet/doubletsinglet
Overlap genenone
Upstream gene4931400O07Rik, 1700019B21Rik, LOC671878, LOC666695, EG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069I12.T7 (MSMg01no069_i12.b1)MSMg01-069I12.TJ (MSMg01no069_i12.g1)
ACCAG293767AG293768
length702690
length of high quality
(start - end)
205 (75 - 279)115 (111 - 225)
definitionCHROMAT_FILE: MSMg01no069_i12.b1 PHD_FILE: MSMg01no069_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:19 2005CHROMAT_FILE: MSMg01no069_i12.g1 PHD_FILE: MSMg01no069_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACATTCTGACATAAATTCAGCTAAAATACTACTAAAGTATAAA
AAAGAACAATGAATAATTAAGTACCAGAGACAACAAGCAGGAGAGTGGAA
AAAGATGTAAAAACTGACATAACAGTGAAAGAATGTGGCACTATTGGAGA
ACCATGGCAGTGAGAGCAGCATTTGTTAGCTGTCATAGCAGTATCCAGAG
GGTAATTAGGCATTTGAGTAACATAACAGGGTAATGGAAGGGGCTAAGGA
GAACTGCAACAAAGTACAATATCATATGCCACTCAAAAAAGGTTCTGCTT
TCAGTTTGAATAATCAATGAAAGAAACCACATGCTATTAGTGCCTATGAT
TGTTGGAAGACTGACTTCAAGGCGACAAGCGAAGCTGTACCTAGCTGCTG
TGAATCTTACAGAGGCTGACCCCTCTTTTCTTCCCCCACGATTATATTTC
ATGCCAAGGCCGACTCGCACATCTACTTAGCTTCCACATAGCTCCGAATC
GCATTACATTCCCCCTTAGCCTTACACTATGTCCCTACTGATACTTTTCT
TCTCCTCCGGATACTTTTTCCTTTCCTCCTGATTCGACCCTAATATTAAT
TGAACGATACCATTCTCAATTATCACTTTTATCCCCCTTGTCCCCTGTAA
TA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCATGGAGAAGAGAAGGAAGAATTGTAGGATCCAGATGGTC
AAGGACCTCACAAGAAACCCCACAAAATCGACCAGCATGTGTCCATAGAG
ACTCATAGAGACTGCCTGCCTATAACCAGGGATCCAGCATGGGATTGACT
TAGGCTCTCTGCATATTTGTTATGGTTGTGGAATTAAGTCTTCTGGGATT
CATAACAGTGGCAACAGGGACTGTCTATGACTGTCTGCTTTGCTCTGTCT
TGTTTTGTTTTGCTTCGCTTCGTCTTAATGCTCTTAGGGATTTTATACTT
CCCCCTCCCCTCACCCCTGCCTCAATATGATGGGTGTCACCTAGCCTTTC
ACAAAAATAAAAAAAAATGTGTGGTTCGGGGCCGTGATATCCTCCCTTTT
TTCACACATAACTGTCGTCTTAGTACTTGTCCGACGAAAAGCCAAATGTA
TCTCCTTTTTCATTTAACCTTCCATTTTACCCCCTCTTATTCCCTCCTCC
CTATTTTTTTCGCTCCTCCTTAATCACTTCTCCATACTTCCTTCGCTCCT
TTTTTTTTTTTGTCCCTATCCCCCTATTATCATTCGCCTTTCCTTTCTTC
TTTGATTTTTATCTACCCTACCTTTTTCTTTTTCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_i12.b1 MSMg01no069_i12.b1 CHROMAT_FILE:
MSMg01no069_i12.b1 PHD_FILE: MSMg01no069_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:19 2005
         (205 letters)



>mm_chrX_60657992_60658593
          Length = 602

 Score =  350 bits (181), Expect = e-101
 Identities = 198/205 (96%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctaaaatactactaaagtataaaaaagaacaatgaataattaagtaccagagacaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| 
Sbjct: 201 cagctaaaatactactaaagtataaaaaagaacaatgaataattaagtagtagagacaa- 259

                                                                       
Query: 61  aagcaggagagtggaaaaagatgtaaaaactgacataacagtgaaagaatgtggcactat 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 --gcaggagagtggaaaaagatgtaaaaactgacataacagtgaaagaatgtggcactat 317

                                                                       
Query: 121 tggagaaccatggcagtgagagcagcatttgttagctgtcatagcagtatccagagggta 180
           |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 318 tggagaaccatggcagtgagagtagcatttgttagctgttatagcagtatccagagggta 377

                                    
Query: 181 attaggcatttgagtaacataacag 205
           |||||||||||||||||||||||||
Sbjct: 378 attaggcatttgagtaacataacag 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 602
Length adjustment: 8
Effective length of query: 197
Effective length of database: 594
Effective search space:   117018
Effective search space used:   117018
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)