BAC Information

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BAC

Clone NameMSMg01-070L10
ChromosomeX (Build37)
Map Location 62,134,959 - 62,135,289
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
Downstream geneLOC100040011, Ctag2, LOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L10.T7 (MSMg01no070_l10.b1)MSMg01-070L10.TJ (MSMg01no070_l10.g1)
ACCAG294669AG294670
length693693
length of high quality
(start - end)
624 (36 - 659)560 (69 - 628)
definitionCHROMAT_FILE: MSMg01no070_l10.b1 PHD_FILE: MSMg01no070_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:52 2005CHROMAT_FILE: MSMg01no070_l10.g1 PHD_FILE: MSMg01no070_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTNTACGACTCCTATATGCAGAGATCCGCGGAATCTCAC
TTGAGCAATACCGAATGGCTGAGAAGCACCTAAAAAAAATGTTCAGCATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTACACCTCA
CACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
TGAGGATGTGGAGAAAGAGGAGCACTCCACCATTGTTGGAGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAACGGG
ACATAGTACTACTGGATGATACAGCAATATCTCTCCTGGGCATATACCCA
GAAGATTTTCCAAGTGGTAATAATGTCACATGCTCCACTATGTTCATAGC
AGCCCGATTTATAATAGTCAGAAGCTGGAAAGATACTAGATGTCCCTCAA
CAGAGGAATGGATACAGGAAATGTGGTACATTTACACAATAGAGTACTAC
TCAGCTCTTAAAAATAATGAATTTATGAAATTCTTAAGCAAATGGATGTA
TCTGGAGGATATCATCCTGAGTGAGGTAACCTAATCACAAAATAATTCAC
TTTATAAGCACTCACTGATAAGTGGATATTAGCCAAGATACTTAGAATAC
CCAAGATACAATTTTCAAAACACAAGAAAATCAAGAATAAGGA
GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCAATACTTTTTAGGTCTTAGGATCTTTTAGC
CCCCTCTTCTGGGCAGTTGCACACACTTGGCTTTTCTCAGGATTTCAAAT
GGCAGTATGCCCACAGGAGTTCAAATAGCAGACCAGCTGCAAAGATGCGG
TCTTAGGTCTAGGAGTTGAGTTGTAGATGGACTCATTAAGGCTAAGCTGT
TGTTTACATTTTACAAATTATGTGTTTCTTTAATGGTCAGCATCTGCTGC
AAACTGAAACTTATTTGATCAGTACTGAGAGCTATAATTATCTGTGAGCA
TGAGGGCAAAGATTTAGAGTGCATCTAGAAATTGTGTTTTTCTACTGAAG
AGGTGTGGTTTAGGTTCTTCTCTAAGGTCCACAGTGTCACTAGCCCTGGG
GAATTGATTAGGTATACAGTTTCAGGCATGTTTCCCTCCTGCTGAGCTTG
CCTTGAAACCAATTTGACTACTTACTACTGGTCATTTCCAAGTTATGCTC
TGTTTCATCTTTCTATATAAAAATATTCCACTCAGTCTTTGGGCCTTGAT
ACTCATCCAATCTCATGGATAAAGACATACATTATAAGTAGATATCCCCT
AGCAGTTTTTGAGTGAGATCTTAGTTTCTACTGCATAAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l10.g1 MSMg01no070_l10.g1 CHROMAT_FILE:
MSMg01no070_l10.g1 PHD_FILE: MSMg01no070_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:53 2005
         (560 letters)



>mm_chrX_62134959_62135918
          Length = 960

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaatactttttaggtcttaggatcttttagccccctcttctgggcagttgcacacactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ccaatactttttaggtcttaggatcttttagccccctcttctgggcagttgcacacactt 272

                                                                       
Query: 61  ggcttttctcaggatttcaaatggcagtatgcccacaggagttcaaatagcagaccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggcttttctcaggatttcaaatggcagtatgcccacaggagttcaaatagcagaccagct 212

                                                                       
Query: 121 gcaaagatgcggtcttaggtctaggagttgagttgtagatggactcattaaggctaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gcaaagatgcggtcttaggtctaggagttgagttgtagatggactcattaaggctaagct 152

                                                                       
Query: 181 gttgtttacattttacaaattatgtgtttctttaatggtcagcatctgctgcaaactgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gttgtttacattttacaaattatgtgtttctttaatggtcagcatctgctgcaaactgaa 92

                                                                       
Query: 241 acttatttgatcagtactgagagctataattatctgtgagcatgagggcaaagatttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  acttatttgatcagtactgagagctataattatctgtgagcatgagggcaaagatttaga 32

                                          
Query: 301 gtgcatctagaaattgtgtttttctactgaa 331
           |||||||||||||||||||||||||||||||
Sbjct: 31  gtgcatctagaaattgtgtttttctactgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)