BAC Information

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BAC

Clone NameMSMg01-070P24
ChromosomeX (Build37)
Map Location 23,071,524 - 23,072,049
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl13, EG635719
Downstream geneWdr44, EG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206, LOC669000, LOC629204, EG546272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070P24.T7 (MSMg01no070_p24.b1)MSMg01-070P24.TJ (MSMg01no070_p24.g1)
ACCAG294888AG294889
length707699
length of high quality
(start - end)
470 (47 - 516)527 (68 - 594)
definitionCHROMAT_FILE: MSMg01no070_p24.b1 PHD_FILE: MSMg01no070_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:15 2005CHROMAT_FILE: MSMg01no070_p24.g1 PHD_FILE: MSMg01no070_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGAAACCGCGGAAT
TCTACCAGACTTTCACAGAAGCGTTAATGCCCATACTTAAATTATTCCAC
AACAGAGAAACAGAAGGAACACTGCCCAAATCATTATACAAGGTCACAGT
TATACTGATACCACACAAAAAAAACAATAAAAAGAAAACATACACACAAA
TTTCTCTTATGAATATAAATGTAAAAATATCAATAAAAATACTTGCAAAC
CAAATCCAAGACCATATCAAAGATCACCCACCATAATCAAGTAGACTTCA
CCCCAGACATTCAGGGATGGTTCATCATAAGTAAGCCAATAAATGTCATC
CACCATATAAGCAAACTAAAGGACAAAAACCCCATGAGCATCTCATTAGA
TGCAGAAGGAGACTTCGACAAAATCCAACACCCTGTCATGATAAAAGTCC
TGGCAAGATTAGGGACTGAAGGGGCATACTTAAACATAATAAAGGAAGTT
TACAGGATTCCTATAGCCAACAGCCAGTTAAATGGAGAGAAACTCAAAAC
AATTCCATTAAAATCAGAAATAAGACAAAGTTGTCCACTCTCTGATATAT
TTGAAGTCATATCTTAAGCAATAAGATAACTAGTGTAGATTAAGGATATA
AAAATTGGAAAGGAATAAGTAAAAGTATCTTTATTTGCAGATGATATGAG
AATATAA
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTATGTTCTGGTTCATTAGCTTTGTGACCT
TGAGAAAACCATTTGTTCCCTGGGAAACTTTGATTCTTGTATATTAGAGA
GGTGCTTAGGTTAGAGCTGAACATTTTGAGTAATTTTCAGCATCGAAAAT
CTGATACTCAGGAATTTTTGATCTTAGGCTCTGCCATGTGCTCTTAGTAA
GAATGTTAGAATCAACCCTGTCTAGAAACTTTGTGCCTTGCCAAATAATG
GACTCTTAGGTGCAATTTGACCTGCTATTGTAATTTCCAGTCTTCACTGC
TTTCCAGCTTTTTTGAGGGTGGTGCATTATTTTATATTGTAATAGTGTTC
ATAAAGGTAATTTTTTTAGTAAAAATGCTTATTAATAAGATAGGACCAAG
GGATCAATTTAAAGCCCAACTTGCATTTTCATCTATGGTATGCTCTCAGG
ATGAGGATTTCTCATCTAGGCTGTGTTTTTCACATTTTATGTGTGCAAAC
CATCAGGTTACTTCTTTGAGAAACACCTGCTGGTCTCATGTGGGGTTATT
TAGCTCAACCCCTTTGTTGAGAAATGTTTCTTTGCAAACCTAAGGGTTTT
CCCTCATGTCAGGTTAGAGCAGGTCCTTGTCCGGCTCACCTTTGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_p24.g1 MSMg01no070_p24.g1 CHROMAT_FILE:
MSMg01no070_p24.g1 PHD_FILE: MSMg01no070_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:15 2005
         (527 letters)



>mm_chrX_23071324_23072249
          Length = 926

 Score = 1004 bits (519), Expect = 0.0
 Identities = 525/527 (99%), Gaps = 1/527 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttatgttctggttcattagctttgtgaccttgagaaaaccatttgttccctgggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cttttatgttctggttcattagctttgtgaccttgagaaaaccatttgttccctgggaaa 667

                                                                       
Query: 61  ctttgattcttgtatattagagaggtgcttaggttagagctgaacattttgagtaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctttgattcttgtatattagagaggtgcttaggttagagctgaacattttgagtaatttt 607

                                                                       
Query: 121 cagcatcgaaaatctgatactcaggaatttttgatcttaggctctgccatgtgctcttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cagcatcgaaaatctgatactcaggaatttttgatcttaggctctgccatgtgctcttag 547

                                                                       
Query: 181 taagaatgttagaatcaaccctgtctagaaactttgtgccttgccaaataatggactctt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 546 taagaatgttagaatcaaccctgtctagaaattttgtgccttgccaaataatggactctt 487

                                                                       
Query: 241 aggtgcaatttgacctgctattgtaatttccagtcttcactgctttccagcttttttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aggtgcaatttgacctgctattgtaatttccagtcttcactgctttccagcttttttgag 427

                                                                       
Query: 301 ggtggtgcattattttatattgtaatagtgttcataaaggtaatttttttagtaaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggtggtgcattattttatattgtaatagtgttcataaaggtaatttttttagtaaaaatg 367

                                                                       
Query: 361 cttattaataagataggaccaagggatcaatttaaagcccaacttgcattttcatctatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttattaataagataggaccaagggatcaatttaaagcccaacttgcattttcatctatg 307

                                                                       
Query: 421 gtatgctctcaggatgaggatttctcatctaggctgtgtttttcacattttatgtgtgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtatgctctcaggatgaggatttctcatctaggctgtgtttttcacattttatgtgtgca 247

                                                          
Query: 481 aaccatcaggttacttctttgagaaacacctgctggtctcatgtggg 527
           |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 246 aaccatcaggttacttctttgagaaaca-ctgctggtctcatgtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space:   473572
Effective search space used:   473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)