CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGAATCCGCGGAA
TTCAAGGAACCTACAGGAAAACTTTAATGATTGAGTTTCTCTAGCTTAAT
CTGATTTCCAGCATCATATATTTCACTATGTATAAGACTAACATATCTTG
CAAAATGCAGAAGAATAGAATTTTAGAAAATACTAAAGTTACTTTCATGT
TGTTGAGAAAATGCAAGAAATATATGAATTATAAAGTTATGCTGAACTCT
TTTATTAAGCTGAATAATTTTTCTGACAAATAAATTATAGAGAAAAATTA
AGCAAATTATGTTAGATTGAAGATGTCTAATTCAATTAAATTATGAATAT
ATTTCCAAAAGTAAATTTTAATAATAGTTTGTTATGTTCAACAGACAACA
CTTTTTGTTAAAGTATGCATGACACACTTAGGAAAATACATTTGATTAAT
TAAAACAAAGAACAAAAACATTTCCACTGAGGTTAATTCAATGTTCTCAC
GGAAATACACTAATACTTTAACAATAATGATTTAAAGATCTGAATCAAGT
TATATAGCATTTTTAGCACATTCTGTTTATTTATAAAATGTGCTTATTAT
AATTTTATTTAGTGGTAATAGTGACAGTCTTGGTGCTGGTGCTATATACG
TGTGTATTTCATCTTTTGAGTTTGAATGAAAAATCATATGTGAAACTTN

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAGTGATATTTCATATATATATATAT
ATACATATATATATATATATAATGATTCACCTGTATGACTCAGGGGCAAG
GCACTCAAAAGGTTCTCAAAAAAAACAAAACAAACAAACAAAAAAACAAC
CAACCAACCAACCAACCAACCAACCAACCAAACAAACAAAACACTTCTAT
GTTCATTGAAGCTTTAGTCACAAGAGCTAGGAAATTGAAATTAGCCAATA
TAGCTTCCAATTGCTGAATAAATAATTTAAAAGATGTATGTGGTGGTTTC
AATATGCTTGGCCCATAGGTAGTGGTACTGATAGGAGGTGTGGCCTTGTT
GTTGCAATTGTGGCATTGAGTGTTCAGGCTCTACCCATTGCAGGGAGAGC
TTCCTCCTAGCTGCTTGAGGATGCTAGACTCTCCTGATTGCCTTTGGATC
AAGATGCAGATACAGAAATCTGAACTCATTCTCCAGCACCATATCTGACT
ACAATACAAGCTGCCATGTTTCCTACTATAATGATAATGGACTAAACACC
TGAAACTGTAAGCCAATTTCAATTAAATGTTTGCATTTATAAGAATTGAC
TTGATTATAGTGTATCTTCACCGCAAAGGAAATCATAACTAAAACAATGC

Query= MSMg01no071_b15.b1 MSMg01no071_b15.b1 CHROMAT_FILE:
MSMg01no071_b15.b1 PHD_FILE: MSMg01no071_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:23 2005
         (656 letters)



>mm_chrX_43390181_43391237
          Length = 1057

 Score = 1176 bits (608), Expect = 0.0
 Identities = 638/654 (97%), Gaps = 12/654 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggaacctacag---gaaaactttaatgattgagtttctctagcttaatctga 61
           |||||||||||||  ||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggaac--acagaaggaaaactttaatgattgagtttctctagcttaatctga 262

                                                                       
Query: 62  tttccagcatcatatatttcactatgtataagactaacatatcttgcaaaatgcagaaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttccagcatcatatatttcactatgtataagactaacatatcttgcaaaatgcagaaga 322

                                                                       
Query: 122 atagaattttagaaaatactaaagttactttcatgttgttgagaaaatgcaagaaatata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atagaattttagaaaatactaaagttactttcatgttgttgagaaaatgcaagaaatata 382

                                                                       
Query: 182 tgaattataaagttatgctgaactcttttattaagctgaataatttttctgacaaataaa 241
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 tgaattataaagttatgctgaactcttttattaagctgaatactttttctgacaaataaa 442

                                                                       
Query: 242 ttatagagaaaaattaagcaaattatgttagattgaagatgtctaattcaattaaattat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatagagaaaaattaagcaaattatgttagattgaagatgtctaattcaattaaattat 502

                                                                       
Query: 302 gaatatatttccaaaagtaaattttaataatagtttgttatgttcaacagacaacacttt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaatatatttccaaaagtaaattttaataatagtttgttatgttcaacagacaacacttt 562

                                                                       
Query: 362 ttgttaaagtatgcatgacacacttaggaaaatacatttgattaattaaaacaaagaaca 421
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 563 ttgttaaagtatgcatgacacacttaggaaaatacgtttgattaattaaaacaaagaaca 622

                                                                       
Query: 422 aaaacatttccactgaggttaattcaatgttctcacggaaatacactaatactttaacaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaacatttccactgaggttaattcaatgttctcacggaaatacactaatactttaacaa 682

                                                                       
Query: 482 taatgatttaaagatctgaatcaagttatatagcatttttagcacattctgtttatttat 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 taatgatttaaagatctgaatcaagttatatagcatttttagcacattctgtttatttct 742

                                                                       
Query: 542 aaaatgtgcttattataattttatttagtggtaatagtgacagtcttggtgctggtgcta 601
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
Sbjct: 743 aaaatgtgcttattataattttatttagtggtaatagtgacggtcttggtgctggt---- 798

                                                                 
Query: 602 tatacgtgtgtatttcatcttttgagtttgaatgaaaaatcatatgtgaaactt 655
              |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ---acgtgtgtatttcatcttttgagtttgaatgaaaaatcatatgtgaaactt 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space:   676362
Effective search space used:   676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)